Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RNU2-59P-201ENST00000410482 191 ntBASIC1.01□□□□□ -2.25
PTCHD1Q96NR3 MIR4484-201ENST00000582855 83 ntBASIC1.01□□□□□ -2.25
PTCHD1Q96NR3 RNU6-340P-201ENST00000364005 107 ntBASIC1□□□□□ -2.25
PTCHD1Q96NR3 RNU6-1177P-201ENST00000391058 104 ntBASIC1□□□□□ -2.25
PTCHD1Q96NR3 MIR4452-201ENST00000583004 71 ntBASIC1□□□□□ -2.25
PTCHD1Q96NR3 MIR6828-201ENST00000636181 60 ntBASIC1□□□□□ -2.25
PTCHD1Q96NR3 SCARNA18B-201ENST00000458806 135 ntBASIC0.99□□□□□ -2.25
PTCHD1Q96NR3 AL078603.1-201ENST00000603824 313 ntBASIC0.99□□□□□ -2.25
PTCHD1Q96NR3 SNORD114-21-201ENST00000606412 72 ntBASIC0.99□□□□□ -2.25
PTCHD1Q96NR3 RNU6-824P-201ENST00000363724 104 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 Y_RNA.606-201ENST00000410579 103 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 AC074348.1-201ENST00000426503 132 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 RNA5SP227-201ENST00000516184 113 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 RNA5SP220-201ENST00000516298 104 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 RNA5SP94-201ENST00000516917 108 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 U6.81-201ENST00000612550 106 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 Y_RNA.788-201ENST00000622394 112 ntBASIC0.98□□□□□ -2.25
PTCHD1Q96NR3 SNORA36.1-201ENST00000363424 132 ntBASIC0.97□□□□□ -2.25
PTCHD1Q96NR3 RNU6-681P-201ENST00000364012 104 ntBASIC0.97□□□□□ -2.25
PTCHD1Q96NR3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.97□□□□□ -2.25
PTCHD1Q96NR3 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.97□□□□□ -2.25
PTCHD1Q96NR3 snoU13.18-201ENST00000459483 104 ntBASIC0.97□□□□□ -2.25
PTCHD1Q96NR3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.97□□□□□ -2.25
PTCHD1Q96NR3 SNORD114-27-201ENST00000363766 70 ntBASIC0.96□□□□□ -2.26
PTCHD1Q96NR3 RNU6-42P-201ENST00000384165 107 ntBASIC0.96□□□□□ -2.26
PTCHD1Q96NR3 RNU6-269P-201ENST00000391077 97 ntBASIC0.96□□□□□ -2.26
PTCHD1Q96NR3 RNA5SP268-201ENST00000516828 124 ntBASIC0.96□□□□□ -2.26
PTCHD1Q96NR3 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.96□□□□□ -2.26
PTCHD1Q96NR3 MIR548O2-201ENST00000616090 70 ntBASIC0.96□□□□□ -2.26
PTCHD1Q96NR3 SNORA36.2-201ENST00000384004 127 ntBASIC0.95□□□□□ -2.26
PTCHD1Q96NR3 MIR608-201ENST00000384820 100 ntBASIC0.95□□□□□ -2.26
PTCHD1Q96NR3 AC093423.1-201ENST00000440817 142 ntBASIC0.95□□□□□ -2.26
PTCHD1Q96NR3 RNU4-38P-201ENST00000364472 129 ntBASIC0.94□□□□□ -2.26
PTCHD1Q96NR3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.94□□□□□ -2.26
PTCHD1Q96NR3 RNU6-154P-201ENST00000384306 106 ntBASIC0.94□□□□□ -2.26
PTCHD1Q96NR3 SNORA8.2-201ENST00000384372 139 ntBASIC0.94□□□□□ -2.26
PTCHD1Q96NR3 AL162376.1-201ENST00000624117 175 ntBASIC0.94□□□□□ -2.26
PTCHD1Q96NR3 MIR4773-1-201ENST00000637203 78 ntBASIC0.94□□□□□ -2.26
PTCHD1Q96NR3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
PTCHD1Q96NR3 Y_RNA.36-201ENST00000362602 112 ntBASIC0.93□□□□□ -2.26
PTCHD1Q96NR3 RNU1-141P-201ENST00000364623 158 ntBASIC0.93□□□□□ -2.26
PTCHD1Q96NR3 RNY1P8-201ENST00000383970 114 ntBASIC0.93□□□□□ -2.26
PTCHD1Q96NR3 MIR4460-201ENST00000577862 86 ntBASIC0.93□□□□□ -2.26
PTCHD1Q96NR3 MIR3134-201ENST00000579433 74 ntBASIC0.93□□□□□ -2.26
PTCHD1Q96NR3 AC103810.9-201ENST00000606688 112 ntBASIC0.93□□□□□ -2.26
PTCHD1Q96NR3 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.93□□□□□ -2.26
PTCHD1Q96NR3 MIR96-201ENST00000362288 78 ntBASIC0.92□□□□□ -2.26
PTCHD1Q96NR3 RNU6-382P-201ENST00000365181 106 ntBASIC0.92□□□□□ -2.26
PTCHD1Q96NR3 Y_RNA.355-201ENST00000365462 98 ntBASIC0.92□□□□□ -2.26
PTCHD1Q96NR3 ACA64.5-201ENST00000516207 127 ntBASIC0.92□□□□□ -2.26
PTCHD1Q96NR3 RNU6-330P-201ENST00000363015 107 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 Y_RNA.118-201ENST00000363300 101 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 SNORD114-22-201ENST00000365423 72 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 RNU6-54P-201ENST00000365563 107 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 RNU6V-201ENST00000384105 107 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 MT-TY-201ENST00000387409 66 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 RNU6-274P-201ENST00000459566 107 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 Y_RNA.681-201ENST00000516445 113 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 AC211469.2-201ENST00000605461 205 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 MIR7107-201ENST00000611489 80 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 MIR6857-201ENST00000613267 93 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 MIR6734-201ENST00000621166 68 ntBASIC0.91□□□□□ -2.26
PTCHD1Q96NR3 RNU6-495P-201ENST00000362995 107 ntBASIC0.9□□□□□ -2.27
PTCHD1Q96NR3 SNORA8.1-201ENST00000384250 140 ntBASIC0.9□□□□□ -2.27
PTCHD1Q96NR3 Y_RNA.545-201ENST00000384652 105 ntBASIC0.9□□□□□ -2.27
PTCHD1Q96NR3 MIR140-201ENST00000385282 100 ntBASIC0.9□□□□□ -2.27
PTCHD1Q96NR3 SNORD75.2-201ENST00000408784 58 ntBASIC0.9□□□□□ -2.27
PTCHD1Q96NR3 RNA5SP484-201ENST00000458857 111 ntBASIC0.9□□□□□ -2.27
PTCHD1Q96NR3 RNU6-70P-201ENST00000516438 60 ntBASIC0.9□□□□□ -2.27
PTCHD1Q96NR3 Y_RNA.565-201ENST00000384719 101 ntBASIC0.89□□□□□ -2.27
PTCHD1Q96NR3 RNU7-24P-201ENST00000458867 62 ntBASIC0.89□□□□□ -2.27
PTCHD1Q96NR3 RNU1-93P-201ENST00000364704 169 ntBASIC0.88□□□□□ -2.27
PTCHD1Q96NR3 RNA5SP517-201ENST00000364724 117 ntBASIC0.88□□□□□ -2.27
PTCHD1Q96NR3 RNU6-411P-201ENST00000384451 107 ntBASIC0.88□□□□□ -2.27
PTCHD1Q96NR3 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.88□□□□□ -2.27
PTCHD1Q96NR3 MIR664A-201ENST00000626086 82 ntBASIC0.88□□□□□ -2.27
PTCHD1Q96NR3 AC073869.9-201ENST00000641610 120 ntBASIC0.88□□□□□ -2.27
PTCHD1Q96NR3 NAMPTP3-201ENST00000569273 224 ntBASIC0.87□□□□□ -2.27
PTCHD1Q96NR3 MIR3675-201ENST00000583661 73 ntBASIC0.87□□□□□ -2.27
PTCHD1Q96NR3 RNU6-110P-201ENST00000384508 104 ntBASIC0.86□□□□□ -2.27
PTCHD1Q96NR3 MIR532-201ENST00000385025 91 ntBASIC0.86□□□□□ -2.27
PTCHD1Q96NR3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.86□□□□□ -2.27
PTCHD1Q96NR3 RNU6-752P-201ENST00000516376 102 ntBASIC0.86□□□□□ -2.27
PTCHD1Q96NR3 AC069503.3-201ENST00000618674 145 ntBASIC0.86□□□□□ -2.27
PTCHD1Q96NR3 AC092634.7-201ENST00000621022 103 ntBASIC0.86□□□□□ -2.27
PTCHD1Q96NR3 MIR6767-201ENST00000637302 66 ntBASIC0.86□□□□□ -2.27
PTCHD1Q96NR3 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
PTCHD1Q96NR3 AL691482.2-201ENST00000457453 84 ntBASIC0.85□□□□□ -2.27
PTCHD1Q96NR3 RPL39P28-201ENST00000465655 155 ntBASIC0.85□□□□□ -2.27
PTCHD1Q96NR3 RNU6-523P-201ENST00000516304 54 ntBASIC0.85□□□□□ -2.27
PTCHD1Q96NR3 MIR151B-201ENST00000584249 96 ntBASIC0.85□□□□□ -2.27
PTCHD1Q96NR3 SNORD42B-201ENST00000458893 67 ntBASIC0.84□□□□□ -2.27
PTCHD1Q96NR3 PSMC1P5-201ENST00000512850 177 ntBASIC0.84□□□□□ -2.27
PTCHD1Q96NR3 RNU5B-6P-201ENST00000516765 68 ntBASIC0.84□□□□□ -2.27
PTCHD1Q96NR3 RNU6-1223P-201ENST00000517124 104 ntBASIC0.84□□□□□ -2.27
PTCHD1Q96NR3 MIR6788-201ENST00000618842 66 ntBASIC0.84□□□□□ -2.27
PTCHD1Q96NR3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
PTCHD1Q96NR3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 167 ms