Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 SNORD53B-201ENST00000577887 78 ntBASIC1.84□□□□□ -2.11
HLA-CQ95604 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HLA-CQ95604 SNORD114-26-201ENST00000363543 72 ntBASIC1.83□□□□□ -2.12
HLA-CQ95604 SNORA7.1-201ENST00000363750 139 ntBASIC1.83□□□□□ -2.12
HLA-CQ95604 SNORA25-201ENST00000384384 134 ntBASIC1.83□□□□□ -2.12
HLA-CQ95604 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
HLA-CQ95604 SNORA40.6-201ENST00000391153 128 ntBASIC1.83□□□□□ -2.12
HLA-CQ95604 RNA5SP102-201ENST00000516865 106 ntBASIC1.83□□□□□ -2.12
HLA-CQ95604 RNA5SP325-201ENST00000363756 130 ntBASIC1.82□□□□□ -2.12
HLA-CQ95604 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.82□□□□□ -2.12
HLA-CQ95604 RNU6-668P-201ENST00000364180 107 ntBASIC1.81□□□□□ -2.12
HLA-CQ95604 MIR9-2-201ENST00000384838 87 ntBASIC1.81□□□□□ -2.12
HLA-CQ95604 SNORD105-201ENST00000386910 85 ntBASIC1.81□□□□□ -2.12
HLA-CQ95604 RNU6-717P-201ENST00000459076 104 ntBASIC1.81□□□□□ -2.12
HLA-CQ95604 RNU6-542P-201ENST00000516405 103 ntBASIC1.81□□□□□ -2.12
HLA-CQ95604 NAMPTP3-201ENST00000569273 224 ntBASIC1.81□□□□□ -2.12
HLA-CQ95604 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.81□□□□□ -2.12
HLA-CQ95604 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HLA-CQ95604 RNU1-42P-201ENST00000364033 160 ntBASIC1.8□□□□□ -2.12
HLA-CQ95604 MIR19B1-201ENST00000384829 87 ntBASIC1.8□□□□□ -2.12
HLA-CQ95604 MT-TY-201ENST00000387409 66 ntBASIC1.8□□□□□ -2.12
HLA-CQ95604 MIR4285-201ENST00000581001 85 ntBASIC1.8□□□□□ -2.12
HLA-CQ95604 MIR6779-201ENST00000617283 64 ntBASIC1.8□□□□□ -2.12
HLA-CQ95604 AC244669.1-204ENST00000621564 178 ntBASIC1.8□□□□□ -2.12
HLA-CQ95604 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
HLA-CQ95604 SNORA2.1-201ENST00000363089 137 ntBASIC1.79□□□□□ -2.12
HLA-CQ95604 SNORD114-22-201ENST00000365423 72 ntBASIC1.79□□□□□ -2.12
HLA-CQ95604 RNU6-54P-201ENST00000365563 107 ntBASIC1.79□□□□□ -2.12
HLA-CQ95604 RNU6-987P-201ENST00000384759 104 ntBASIC1.79□□□□□ -2.12
HLA-CQ95604 MIR200A-201ENST00000384875 90 ntBASIC1.79□□□□□ -2.12
HLA-CQ95604 MIR3657-201ENST00000584818 117 ntBASIC1.79□□□□□ -2.12
HLA-CQ95604 SNORD114-4-201ENST00000363962 75 ntBASIC1.78□□□□□ -2.12
HLA-CQ95604 RNU6-1187P-201ENST00000364771 110 ntBASIC1.78□□□□□ -2.12
HLA-CQ95604 RNA5SP160-201ENST00000364866 120 ntBASIC1.78□□□□□ -2.12
HLA-CQ95604 Y_RNA.375-201ENST00000365625 101 ntBASIC1.78□□□□□ -2.12
HLA-CQ95604 RNU6-260P-201ENST00000384092 107 ntBASIC1.78□□□□□ -2.12
HLA-CQ95604 Y_RNA.250-201ENST00000364542 110 ntBASIC1.77□□□□□ -2.13
HLA-CQ95604 RNU6V-201ENST00000384105 107 ntBASIC1.77□□□□□ -2.13
HLA-CQ95604 MIR644A-201ENST00000385262 94 ntBASIC1.77□□□□□ -2.13
HLA-CQ95604 MTND4LP19-201ENST00000403051 166 ntBASIC1.77□□□□□ -2.13
HLA-CQ95604 RNU6-982P-201ENST00000516216 102 ntBASIC1.77□□□□□ -2.13
HLA-CQ95604 RNA5SP47-201ENST00000517230 109 ntBASIC1.77□□□□□ -2.13
HLA-CQ95604 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.77□□□□□ -2.13
HLA-CQ95604 SNORA16.1-201ENST00000364597 132 ntBASIC1.76□□□□□ -2.13
HLA-CQ95604 RNU6-726P-201ENST00000364680 107 ntBASIC1.76□□□□□ -2.13
HLA-CQ95604 MIR548L-201ENST00000408303 86 ntBASIC1.76□□□□□ -2.13
HLA-CQ95604 RNA5SP338-201ENST00000410495 85 ntBASIC1.76□□□□□ -2.13
HLA-CQ95604 RNU1-92P-201ENST00000517017 135 ntBASIC1.76□□□□□ -2.13
HLA-CQ95604 AC012493.3-201ENST00000604494 112 ntBASIC1.76□□□□□ -2.13
HLA-CQ95604 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.76□□□□□ -2.13
HLA-CQ95604 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.76□□□□□ -2.13
HLA-CQ95604 SNORD18A-201ENST00000363753 72 ntBASIC1.75□□□□□ -2.13
HLA-CQ95604 MIR4460-201ENST00000577862 86 ntBASIC1.75□□□□□ -2.13
HLA-CQ95604 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
HLA-CQ95604 SNORD89-201ENST00000390981 114 ntBASIC1.74□□□□□ -2.13
HLA-CQ95604 SNORA67.6-201ENST00000391093 99 ntBASIC1.74□□□□□ -2.13
HLA-CQ95604 MIR4421-201ENST00000578133 69 ntBASIC1.74□□□□□ -2.13
HLA-CQ95604 AC025627.3-201ENST00000582078 182 ntBASIC1.74□□□□□ -2.13
HLA-CQ95604 MIR6515-201ENST00000619843 57 ntBASIC1.74□□□□□ -2.13
HLA-CQ95604 RNA5SP215-201ENST00000363440 122 ntBASIC1.73□□□□□ -2.13
HLA-CQ95604 SNORA8.2-201ENST00000384372 139 ntBASIC1.73□□□□□ -2.13
HLA-CQ95604 RNU4-37P-201ENST00000410214 84 ntBASIC1.73□□□□□ -2.13
HLA-CQ95604 AC022709.1-201ENST00000615967 87 ntBASIC1.73□□□□□ -2.13
HLA-CQ95604 RNU6-645P-201ENST00000364649 106 ntBASIC1.72□□□□□ -2.13
HLA-CQ95604 MIR573-201ENST00000384964 99 ntBASIC1.72□□□□□ -2.13
HLA-CQ95604 SNORD42B-201ENST00000458893 67 ntBASIC1.72□□□□□ -2.13
HLA-CQ95604 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.72□□□□□ -2.13
HLA-CQ95604 SCARNA16.5-201ENST00000517114 183 ntBASIC1.72□□□□□ -2.13
HLA-CQ95604 RNU1-141P-201ENST00000364623 158 ntBASIC1.71□□□□□ -2.14
HLA-CQ95604 MIR6739-201ENST00000622461 75 ntBASIC1.71□□□□□ -2.14
HLA-CQ95604 RNA5SP327-201ENST00000362494 101 ntBASIC1.7□□□□□ -2.14
HLA-CQ95604 MIR203A-201ENST00000384836 110 ntBASIC1.7□□□□□ -2.14
HLA-CQ95604 MIR3122-201ENST00000577243 73 ntBASIC1.7□□□□□ -2.14
HLA-CQ95604 MIR4419B-201ENST00000577260 68 ntBASIC1.7□□□□□ -2.14
HLA-CQ95604 AL353770.2-201ENST00000620024 78 ntBASIC1.7□□□□□ -2.14
HLA-CQ95604 RNU4-45P-201ENST00000365469 141 ntBASIC1.69□□□□□ -2.14
HLA-CQ95604 MIR517C-201ENST00000385103 95 ntBASIC1.69□□□□□ -2.14
HLA-CQ95604 MIR3678-201ENST00000578455 94 ntBASIC1.68□□□□□ -2.14
HLA-CQ95604 AL109933.3-201ENST00000619095 188 ntBASIC1.68□□□□□ -2.14
HLA-CQ95604 SNORA31.24-201ENST00000517232 57 ntBASIC1.67□□□□□ -2.14
HLA-CQ95604 AC018659.1-201ENST00000551083 169 ntBASIC1.67□□□□□ -2.14
HLA-CQ95604 MIR3612-201ENST00000579753 87 ntBASIC1.67□□□□□ -2.14
HLA-CQ95604 MIR6828-201ENST00000636181 60 ntBASIC1.67□□□□□ -2.14
HLA-CQ95604 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.66□□□□□ -2.14
HLA-CQ95604 SUMO2P12-201ENST00000405924 140 ntBASIC1.66□□□□□ -2.14
HLA-CQ95604 MIR6078-201ENST00000611069 100 ntBASIC1.66□□□□□ -2.14
HLA-CQ95604 PVT1_3.1-201ENST00000620853 95 ntBASIC1.66□□□□□ -2.14
HLA-CQ95604 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HLA-CQ95604 RNU6-302P-201ENST00000365249 107 ntBASIC1.65□□□□□ -2.15
HLA-CQ95604 AL162376.1-201ENST00000624117 175 ntBASIC1.65□□□□□ -2.15
HLA-CQ95604 RNU6-940P-201ENST00000363433 104 ntBASIC1.64□□□□□ -2.15
HLA-CQ95604 SNORA25.5-201ENST00000363782 126 ntBASIC1.64□□□□□ -2.15
HLA-CQ95604 RNU6-1335P-201ENST00000365426 107 ntBASIC1.64□□□□□ -2.15
HLA-CQ95604 SNORD26-201ENST00000384147 75 ntBASIC1.64□□□□□ -2.15
HLA-CQ95604 AC092634.7-201ENST00000621022 103 ntBASIC1.64□□□□□ -2.15
HLA-CQ95604 SNORD114-24-201ENST00000365029 72 ntBASIC1.63□□□□□ -2.15
HLA-CQ95604 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
HLA-CQ95604 RNU6-269P-201ENST00000391077 97 ntBASIC1.63□□□□□ -2.15
HLA-CQ95604 AC079150.2-201ENST00000443733 78 ntBASIC1.63□□□□□ -2.15
HLA-CQ95604 SCARNA21.1-201ENST00000515996 128 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 195.4 ms