Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR1302-5-201ENST00000408164 150 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 RNU7-61P-201ENST00000515897 61 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 AC069503.3-201ENST00000618674 145 ntBASIC0.06□□□□□ -2.4
ZNF540Q8NDQ6 MIR450A1-201ENST00000362262 91 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 SNORA63.4-201ENST00000362763 126 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.291-201ENST00000364886 113 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 SNORD90-201ENST00000391145 111 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 MIR876-201ENST00000401147 81 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-935P-201ENST00000410371 100 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 RNU7-74P-201ENST00000459104 62 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 SNORA25.13-201ENST00000516395 103 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.818-201ENST00000618813 71 ntBASIC0.05□□□□□ -2.4
ZNF540Q8NDQ6 SNORD114-5-201ENST00000362928 70 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 RNA5SP292-201ENST00000390974 118 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-887P-201ENST00000410660 100 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.705-201ENST00000516862 110 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-158P-201ENST00000517104 100 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 MIR3064-201ENST00000581130 66 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 MIR4290-201ENST00000583807 95 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 MIR548O2-201ENST00000616090 70 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 MIR2909-201ENST00000617113 69 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 MIR371B-201ENST00000638082 66 ntBASIC0.04□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.93-201ENST00000363066 109 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.107-201ENST00000363190 121 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 RNU6-1081P-201ENST00000384537 107 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 RNU5B-6P-201ENST00000516765 68 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 YWHAEP2-201ENST00000580066 112 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 MIR5190-201ENST00000581537 80 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 MIR4473-201ENST00000583731 91 ntBASIC0.03□□□□□ -2.4
ZNF540Q8NDQ6 Y_RNA.68-201ENST00000362881 102 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.290-201ENST00000364879 114 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 SNORA24B-201ENST00000384176 131 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 MIR145-201ENST00000384967 88 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 MIR451A-201ENST00000385059 72 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-972P-201ENST00000391208 107 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 MTATP8P2-201ENST00000435212 202 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 AC026421.1-201ENST00000519101 163 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 MIR4460-201ENST00000577862 86 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 MIR4536-1-201ENST00000583537 88 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 AC104996.3-201ENST00000590718 94 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 U7.3-201ENST00000616123 62 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.02□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-640P-201ENST00000363693 105 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.190-201ENST00000363964 101 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.348-201ENST00000365403 103 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-147P-201ENST00000383983 107 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 MIR593-201ENST00000384856 100 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 AL031737.1-201ENST00000450125 223 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-162P-201ENST00000516228 103 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-919P-201ENST00000516731 104 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 SCARNA11.2-201ENST00000517183 154 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 MIR3140-201ENST00000583685 90 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 U7.6-201ENST00000610841 64 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 RN7SL660P-201ENST00000614852 299 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.01□□□□□ -2.41
ZNF540Q8NDQ6 SNORD114-16-201ENST00000363044 70 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 SNORD116-10-201ENST00000363791 102 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-54P-201ENST00000365563 107 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-44P-201ENST00000384045 107 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 RNU6V-201ENST00000384105 107 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0□□□□□ -2.41
ZNF540Q8NDQ6 SNORD42B-201ENST00000458893 67 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-65P-201ENST00000516332 98 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-180P-201ENST00000516697 61 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-175P-201ENST00000516896 107 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 MIR4743-201ENST00000584576 69 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 AP001318.4-201ENST00000616637 121 ntBASIC0□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 MIR516B1-201ENST00000385211 90 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-519P-201ENST00000410590 108 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 AL035461.1-201ENST00000421490 332 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNU7-165P-201ENST00000458864 60 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNA5SP285-201ENST00000516619 119 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 RNU7-188P-201ENST00000517063 64 ntBASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.01□□□□□ -2.41
ZNF540Q8NDQ6 SNORD115-27-201ENST00000364430 82 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 MIR488-201ENST00000365739 83 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-811P-201ENST00000384069 107 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-905P-201ENST00000384434 107 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 MIR329-2-201ENST00000385029 84 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 MIR4667-201ENST00000578933 66 ntBASIC-0.02□□□□□ -2.41
ZNF540Q8NDQ6 SNORA63.2-201ENST00000362603 126 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-497P-201ENST00000365316 104 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-652P-201ENST00000365488 107 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 MIR582-201ENST00000365731 98 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-929P-201ENST00000384429 107 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 MIR610-201ENST00000385139 96 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 MIR652-201ENST00000385278 98 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 SNORA49-201ENST00000386157 136 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 SNORA75.1-201ENST00000391130 148 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 U3.27-201ENST00000391237 200 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms