Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR6828-201ENST00000636181 60 ntBASIC1.18□□□□□ -2.22
UBE3DQ7Z6J8 MIR4773-1-201ENST00000637203 78 ntBASIC1.18□□□□□ -2.22
UBE3DQ7Z6J8 MIR26B-201ENST00000362251 77 ntBASIC1.17□□□□□ -2.22
UBE3DQ7Z6J8 Y_RNA.258-201ENST00000364613 105 ntBASIC1.17□□□□□ -2.22
UBE3DQ7Z6J8 SNORA8.2-201ENST00000384372 139 ntBASIC1.16□□□□□ -2.22
UBE3DQ7Z6J8 AC244098.3-201ENST00000424803 96 ntBASIC1.16□□□□□ -2.22
UBE3DQ7Z6J8 AL353770.2-201ENST00000620024 78 ntBASIC1.16□□□□□ -2.22
UBE3DQ7Z6J8 MIR664A-201ENST00000626086 82 ntBASIC1.16□□□□□ -2.22
UBE3DQ7Z6J8 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.15□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-1335P-201ENST00000365426 107 ntBASIC1.15□□□□□ -2.23
UBE3DQ7Z6J8 MT-TY-201ENST00000387409 66 ntBASIC1.15□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-237P-201ENST00000515985 71 ntBASIC1.15□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-649P-201ENST00000384463 107 ntBASIC1.14□□□□□ -2.23
UBE3DQ7Z6J8 AL603825.1-201ENST00000438481 80 ntBASIC1.14□□□□□ -2.23
UBE3DQ7Z6J8 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.14□□□□□ -2.23
UBE3DQ7Z6J8 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.14□□□□□ -2.23
UBE3DQ7Z6J8 MIR18A-201ENST00000362310 71 ntBASIC1.13□□□□□ -2.23
UBE3DQ7Z6J8 SNORD99-201ENST00000408612 74 ntBASIC1.13□□□□□ -2.23
UBE3DQ7Z6J8 AL691482.2-201ENST00000457453 84 ntBASIC1.13□□□□□ -2.23
UBE3DQ7Z6J8 RNA5SP458-201ENST00000516188 119 ntBASIC1.13□□□□□ -2.23
UBE3DQ7Z6J8 AC073869.9-201ENST00000641610 120 ntBASIC1.13□□□□□ -2.23
UBE3DQ7Z6J8 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
UBE3DQ7Z6J8 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.12□□□□□ -2.23
UBE3DQ7Z6J8 RNU1-141P-201ENST00000364623 158 ntBASIC1.12□□□□□ -2.23
UBE3DQ7Z6J8 MIR4460-201ENST00000577862 86 ntBASIC1.12□□□□□ -2.23
UBE3DQ7Z6J8 AC011195.1-201ENST00000578177 177 ntBASIC1.12□□□□□ -2.23
UBE3DQ7Z6J8 MIR4661-201ENST00000582720 75 ntBASIC1.12□□□□□ -2.23
UBE3DQ7Z6J8 AL162376.1-201ENST00000624117 175 ntBASIC1.12□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-1039P-201ENST00000383931 107 ntBASIC1.11□□□□□ -2.23
UBE3DQ7Z6J8 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.11□□□□□ -2.23
UBE3DQ7Z6J8 SNORD45.1-201ENST00000363181 77 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 SNORD114-4-201ENST00000363962 75 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-716P-201ENST00000365621 103 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 RNU6V-201ENST00000384105 107 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-540P-201ENST00000384622 101 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-939P-201ENST00000384634 107 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 AL353765.1-201ENST00000605514 183 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 snoU13.31-201ENST00000607291 104 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 AC069503.3-201ENST00000618674 145 ntBASIC1.1□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-54P-201ENST00000365563 107 ntBASIC1.09□□□□□ -2.23
UBE3DQ7Z6J8 RNU6-895P-201ENST00000384125 103 ntBASIC1.09□□□□□ -2.23
UBE3DQ7Z6J8 MIR7-2-201ENST00000384970 110 ntBASIC1.09□□□□□ -2.23
UBE3DQ7Z6J8 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.09□□□□□ -2.23
UBE3DQ7Z6J8 RNA5SP227-201ENST00000516184 113 ntBASIC1.09□□□□□ -2.23
UBE3DQ7Z6J8 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.09□□□□□ -2.23
UBE3DQ7Z6J8 MIR3124-201ENST00000582636 67 ntBASIC1.09□□□□□ -2.23
UBE3DQ7Z6J8 SNORD115-31-201ENST00000365318 82 ntBASIC1.08□□□□□ -2.24
UBE3DQ7Z6J8 RNU6-269P-201ENST00000391077 97 ntBASIC1.08□□□□□ -2.24
UBE3DQ7Z6J8 RNU6-663P-201ENST00000391105 106 ntBASIC1.08□□□□□ -2.24
UBE3DQ7Z6J8 SNORD30.1-201ENST00000391309 70 ntBASIC1.08□□□□□ -2.24
UBE3DQ7Z6J8 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.08□□□□□ -2.24
UBE3DQ7Z6J8 MIR6509-201ENST00000614603 85 ntBASIC1.08□□□□□ -2.24
UBE3DQ7Z6J8 RNU6-881P-201ENST00000516813 102 ntBASIC1.07□□□□□ -2.24
UBE3DQ7Z6J8 RNA5SP268-201ENST00000516828 124 ntBASIC1.07□□□□□ -2.24
UBE3DQ7Z6J8 RNA5SP94-201ENST00000516917 108 ntBASIC1.07□□□□□ -2.24
UBE3DQ7Z6J8 U6.111-201ENST00000636093 83 ntBASIC1.07□□□□□ -2.24
UBE3DQ7Z6J8 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
UBE3DQ7Z6J8 SNORD115-22-201ENST00000364456 82 ntBASIC1.06□□□□□ -2.24
UBE3DQ7Z6J8 RNU6-604P-201ENST00000390917 100 ntBASIC1.06□□□□□ -2.24
UBE3DQ7Z6J8 NAMPTP3-201ENST00000569273 224 ntBASIC1.06□□□□□ -2.24
UBE3DQ7Z6J8 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
UBE3DQ7Z6J8 Y_RNA.327-201ENST00000365201 102 ntBASIC1.05□□□□□ -2.24
UBE3DQ7Z6J8 MIR4498-201ENST00000577599 66 ntBASIC1.05□□□□□ -2.24
UBE3DQ7Z6J8 SNORA36.1-201ENST00000363424 132 ntBASIC1.04□□□□□ -2.24
UBE3DQ7Z6J8 SNORA2.1-201ENST00000363089 137 ntBASIC1.03□□□□□ -2.24
UBE3DQ7Z6J8 Y_RNA.250-201ENST00000364542 110 ntBASIC1.03□□□□□ -2.24
UBE3DQ7Z6J8 SNORD45A-201ENST00000384512 84 ntBASIC1.03□□□□□ -2.24
UBE3DQ7Z6J8 MIR1285-1-201ENST00000408593 84 ntBASIC1.03□□□□□ -2.24
UBE3DQ7Z6J8 RNA5SP484-201ENST00000458857 111 ntBASIC1.03□□□□□ -2.24
UBE3DQ7Z6J8 MIR6078-201ENST00000611069 100 ntBASIC1.03□□□□□ -2.24
UBE3DQ7Z6J8 RNU6-1216P-201ENST00000362590 107 ntBASIC1.02□□□□□ -2.25
UBE3DQ7Z6J8 SNORD113.1-201ENST00000363280 73 ntBASIC1.02□□□□□ -2.25
UBE3DQ7Z6J8 RNU6-392P-201ENST00000364926 101 ntBASIC1.02□□□□□ -2.25
UBE3DQ7Z6J8 RNU6-800P-201ENST00000384473 103 ntBASIC1.02□□□□□ -2.25
UBE3DQ7Z6J8 SNORD42B-201ENST00000458893 67 ntBASIC1.02□□□□□ -2.25
UBE3DQ7Z6J8 SNORD114-21-201ENST00000606412 72 ntBASIC1.02□□□□□ -2.25
UBE3DQ7Z6J8 RNU6-260P-201ENST00000384092 107 ntBASIC1.01□□□□□ -2.25
UBE3DQ7Z6J8 RNA5SP222-201ENST00000411039 105 ntBASIC1.01□□□□□ -2.25
UBE3DQ7Z6J8 AC125388.1-201ENST00000459631 156 ntBASIC1.01□□□□□ -2.25
UBE3DQ7Z6J8 MIR3657-201ENST00000584818 117 ntBASIC1.01□□□□□ -2.25
UBE3DQ7Z6J8 SNORA25.4-201ENST00000363666 124 ntBASIC1□□□□□ -2.25
UBE3DQ7Z6J8 MTND4LP1-201ENST00000446263 157 ntBASIC1□□□□□ -2.25
UBE3DQ7Z6J8 MIR4295-201ENST00000585286 85 ntBASIC1□□□□□ -2.25
UBE3DQ7Z6J8 MIR7107-201ENST00000611489 80 ntBASIC1□□□□□ -2.25
UBE3DQ7Z6J8 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
UBE3DQ7Z6J8 Y_RNA.386-201ENST00000383913 105 ntBASIC0.99□□□□□ -2.25
UBE3DQ7Z6J8 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
UBE3DQ7Z6J8 RNU6-321P-201ENST00000410912 106 ntBASIC0.99□□□□□ -2.25
UBE3DQ7Z6J8 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.99□□□□□ -2.25
UBE3DQ7Z6J8 RNU6-471P-201ENST00000383944 106 ntBASIC0.98□□□□□ -2.25
UBE3DQ7Z6J8 Y_RNA.443-201ENST00000384135 111 ntBASIC0.98□□□□□ -2.25
UBE3DQ7Z6J8 MIR608-201ENST00000384820 100 ntBASIC0.98□□□□□ -2.25
UBE3DQ7Z6J8 MIR140-201ENST00000385282 100 ntBASIC0.98□□□□□ -2.25
UBE3DQ7Z6J8 AC006210.1-201ENST00000424882 111 ntBASIC0.98□□□□□ -2.25
UBE3DQ7Z6J8 TRMT112P2-201ENST00000512910 132 ntBASIC0.98□□□□□ -2.25
UBE3DQ7Z6J8 MIR5706-201ENST00000579841 80 ntBASIC0.98□□□□□ -2.25
UBE3DQ7Z6J8 Y_RNA.338-201ENST00000365320 114 ntBASIC0.97□□□□□ -2.25
UBE3DQ7Z6J8 Y_RNA.407-201ENST00000383986 113 ntBASIC0.97□□□□□ -2.25
UBE3DQ7Z6J8 OR2A41P-201ENST00000473586 105 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 230.2 ms