Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 NAMPTP3-201ENST00000569273 224 ntBASIC0.25□□□□□ -2.37
SHHQ15465 MIR548AE1-201ENST00000583292 70 ntBASIC0.25□□□□□ -2.37
SHHQ15465 MALAT1.1-201ENST00000618249 95 ntBASIC0.25□□□□□ -2.37
SHHQ15465 AL162376.1-201ENST00000624117 175 ntBASIC0.25□□□□□ -2.37
SHHQ15465 RNU6-1229P-201ENST00000364295 107 ntBASIC0.24□□□□□ -2.37
SHHQ15465 SNORD41.1-201ENST00000391000 69 ntBASIC0.24□□□□□ -2.37
SHHQ15465 MIR548L-201ENST00000408303 86 ntBASIC0.24□□□□□ -2.37
SHHQ15465 RNY4P30-201ENST00000410216 95 ntBASIC0.24□□□□□ -2.37
SHHQ15465 Y_RNA.648-201ENST00000459455 110 ntBASIC0.24□□□□□ -2.37
SHHQ15465 AC108740.1-201ENST00000498629 225 ntBASIC0.24□□□□□ -2.37
SHHQ15465 Y_RNA.677-201ENST00000516401 85 ntBASIC0.24□□□□□ -2.37
SHHQ15465 RNU7-13P-201ENST00000516413 62 ntBASIC0.24□□□□□ -2.37
SHHQ15465 RNU5B-6P-201ENST00000516765 68 ntBASIC0.24□□□□□ -2.37
SHHQ15465 Y_RNA.73-201ENST00000362910 113 ntBASIC0.23□□□□□ -2.37
SHHQ15465 Y_RNA.93-201ENST00000363066 109 ntBASIC0.23□□□□□ -2.37
SHHQ15465 MIR106A-201ENST00000384870 81 ntBASIC0.23□□□□□ -2.37
SHHQ15465 RNU6-402P-201ENST00000410678 103 ntBASIC0.23□□□□□ -2.37
SHHQ15465 HMGN2P22-201ENST00000427588 175 ntBASIC0.23□□□□□ -2.37
SHHQ15465 AC093423.1-201ENST00000440817 142 ntBASIC0.23□□□□□ -2.37
SHHQ15465 Y_RNA.705-201ENST00000516862 110 ntBASIC0.23□□□□□ -2.37
SHHQ15465 RNU6-762P-201ENST00000517107 102 ntBASIC0.23□□□□□ -2.37
SHHQ15465 MIR3064-201ENST00000581130 66 ntBASIC0.23□□□□□ -2.37
SHHQ15465 MTRNR2L2-201ENST00000604882 87 ntBASIC0.23□□□□□ -2.37
SHHQ15465 Y_RNA.818-201ENST00000618813 71 ntBASIC0.23□□□□□ -2.37
SHHQ15465 RNU6-664P-201ENST00000362381 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-1125P-201ENST00000363601 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-54P-201ENST00000365563 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-32P-201ENST00000383948 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-13P-201ENST00000384248 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-480P-201ENST00000384332 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-12P-201ENST00000384604 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU6-41P-201ENST00000384741 107 ntBASIC0.22□□□□□ -2.37
SHHQ15465 MIR501-201ENST00000390204 84 ntBASIC0.22□□□□□ -2.37
SHHQ15465 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
SHHQ15465 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.22□□□□□ -2.37
SHHQ15465 snoU13.17-201ENST00000458802 104 ntBASIC0.22□□□□□ -2.37
SHHQ15465 FGF7P7-201ENST00000514120 227 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU7-129P-201ENST00000516128 62 ntBASIC0.22□□□□□ -2.37
SHHQ15465 MIR4473-201ENST00000583731 91 ntBASIC0.22□□□□□ -2.37
SHHQ15465 RNU1-141P-201ENST00000364623 158 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNU6-219P-201ENST00000364728 107 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNY4P3-201ENST00000365254 95 ntBASIC0.21□□□□□ -2.38
SHHQ15465 SNORD101-201ENST00000384027 73 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR643-201ENST00000385267 97 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR760-201ENST00000390220 80 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNU6-466P-201ENST00000391224 103 ntBASIC0.21□□□□□ -2.38
SHHQ15465 Y_RNA.593-201ENST00000410292 98 ntBASIC0.21□□□□□ -2.38
SHHQ15465 snoU13.19-201ENST00000459148 104 ntBASIC0.21□□□□□ -2.38
SHHQ15465 AC097510.1-201ENST00000510945 133 ntBASIC0.21□□□□□ -2.38
SHHQ15465 SNORA18.5-201ENST00000516616 101 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
SHHQ15465 MIR4536-1-201ENST00000583537 88 ntBASIC0.21□□□□□ -2.38
SHHQ15465 RNU7-10P-201ENST00000607194 63 ntBASIC0.21□□□□□ -2.38
SHHQ15465 Y_RNA.10-201ENST00000362371 110 ntBASIC0.2□□□□□ -2.38
SHHQ15465 Y_RNA.544-201ENST00000384650 113 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR451A-201ENST00000385059 72 ntBASIC0.2□□□□□ -2.38
SHHQ15465 RNU6-127P-201ENST00000390897 107 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR548H2-201ENST00000408874 88 ntBASIC0.2□□□□□ -2.38
SHHQ15465 Y_RNA.596-201ENST00000410462 109 ntBASIC0.2□□□□□ -2.38
SHHQ15465 RNU6-519P-201ENST00000410590 108 ntBASIC0.2□□□□□ -2.38
SHHQ15465 SNORD42B-201ENST00000458893 67 ntBASIC0.2□□□□□ -2.38
SHHQ15465 SNORA40.13-201ENST00000516379 120 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR5582-201ENST00000579697 68 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR4439-201ENST00000583746 80 ntBASIC0.2□□□□□ -2.38
SHHQ15465 MIR3925-201ENST00000584674 77 ntBASIC0.2□□□□□ -2.38
SHHQ15465 AC104996.3-201ENST00000590718 94 ntBASIC0.2□□□□□ -2.38
SHHQ15465 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.2□□□□□ -2.38
SHHQ15465 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.2□□□□□ -2.38
SHHQ15465 RNU6-1113P-201ENST00000384348 107 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNU6-972P-201ENST00000391208 107 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNU2-59P-201ENST00000410482 191 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNA5SP25-201ENST00000410815 110 ntBASIC0.19□□□□□ -2.38
SHHQ15465 AC073261.1-201ENST00000429409 121 ntBASIC0.19□□□□□ -2.38
SHHQ15465 RNU6-65P-201ENST00000516332 98 ntBASIC0.19□□□□□ -2.38
SHHQ15465 MIR4668-201ENST00000582284 70 ntBASIC0.19□□□□□ -2.38
SHHQ15465 MIR582-201ENST00000365731 98 ntBASIC0.18□□□□□ -2.38
SHHQ15465 RNU6V-201ENST00000384105 107 ntBASIC0.18□□□□□ -2.38
SHHQ15465 MIR617-201ENST00000385030 97 ntBASIC0.18□□□□□ -2.38
SHHQ15465 Y_RNA.620-201ENST00000411009 88 ntBASIC0.18□□□□□ -2.38
SHHQ15465 SNORD71-201ENST00000411292 86 ntBASIC0.18□□□□□ -2.38
SHHQ15465 YWHAEP2-201ENST00000580066 112 ntBASIC0.18□□□□□ -2.38
SHHQ15465 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.18□□□□□ -2.38
SHHQ15465 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.18□□□□□ -2.38
SHHQ15465 Y_RNA.17-201ENST00000362433 111 ntBASIC0.17□□□□□ -2.38
SHHQ15465 SNORD116-10-201ENST00000363791 102 ntBASIC0.17□□□□□ -2.38
SHHQ15465 Y_RNA.185-201ENST00000363894 100 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-497P-201ENST00000365316 104 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-811P-201ENST00000384069 107 ntBASIC0.17□□□□□ -2.38
SHHQ15465 SNORA24B-201ENST00000384176 131 ntBASIC0.17□□□□□ -2.38
SHHQ15465 Y_RNA.491-201ENST00000384417 107 ntBASIC0.17□□□□□ -2.38
SHHQ15465 SNORD110-201ENST00000408189 75 ntBASIC0.17□□□□□ -2.38
SHHQ15465 MIR1295A-201ENST00000408463 79 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-158P-201ENST00000517104 100 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-844P-201ENST00000517175 102 ntBASIC0.17□□□□□ -2.38
SHHQ15465 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.17□□□□□ -2.38
SHHQ15465 RNU6-1051P-201ENST00000365471 102 ntBASIC0.16□□□□□ -2.38
SHHQ15465 Y_RNA.558-201ENST00000384685 113 ntBASIC0.16□□□□□ -2.38
SHHQ15465 AC006210.1-201ENST00000424882 111 ntBASIC0.16□□□□□ -2.38
SHHQ15465 RNU6-135P-201ENST00000516769 101 ntBASIC0.16□□□□□ -2.38
SHHQ15465 SNORA40.17-201ENST00000517256 115 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms