Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU7-74P-201ENST00000459104 62 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 AC108740.1-201ENST00000498629 225 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 FGF7P7-201ENST00000514120 227 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 MIR4460-201ENST00000577862 86 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 MIR3140-201ENST00000583685 90 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 AC104996.3-201ENST00000590718 94 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 MIR2052-201ENST00000636055 55 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 AC073869.9-201ENST00000641610 120 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNA5SP128-201ENST00000365305 116 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 Y_RNA.491-201ENST00000384417 107 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 MIR643-201ENST00000385267 97 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 RNU6-127P-201ENST00000390897 107 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 AC069113.3-201ENST00000521019 150 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 YWHAEP2-201ENST00000580066 112 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 RN7SL793P-201ENST00000583259 296 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 PVT1_3.1-201ENST00000620853 95 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
HOXA1P49639 RNU6-1327P-201ENST00000365302 105 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 RNU6-49P-201ENST00000384256 107 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 RNU7-153P-201ENST00000516455 62 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 SNORA18.5-201ENST00000516616 101 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 RNU6-1057P-201ENST00000517162 102 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 SNORA9.1-201ENST00000362412 131 ntBASIC0.22□□□□□ -2.37
HOXA1P49639 RNY4P30-201ENST00000410216 95 ntBASIC0.22□□□□□ -2.37
HOXA1P49639 MIR548AE1-201ENST00000583292 70 ntBASIC0.22□□□□□ -2.37
HOXA1P49639 MIR548U-201ENST00000390728 81 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 RNU6-267P-201ENST00000516714 103 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 MIR5706-201ENST00000579841 80 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 RNU6V-201ENST00000384105 107 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 MIR193B-201ENST00000384907 83 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 MT-TY-201ENST00000387409 66 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 RNU6-402P-201ENST00000410678 103 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 RNU6-762P-201ENST00000517107 102 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 MIR4668-201ENST00000582284 70 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 AC069503.3-201ENST00000618674 145 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 AC010487.4-201ENST00000637027 61 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 Y_RNA.125-201ENST00000363371 111 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 RNU6-54P-201ENST00000365563 107 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 RNA5SP480-201ENST00000516840 109 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 MIR4677-201ENST00000584153 80 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 Y_RNA.220-201ENST00000364244 109 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 RNU6-1051P-201ENST00000365471 102 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 RNA5SP193-201ENST00000410353 107 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 MIR548AD-201ENST00000584780 82 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 MIR548O2-201ENST00000616090 70 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 MIR3925-201ENST00000584674 77 ntBASIC0.17□□□□□ -2.38
HOXA1P49639 RNA5SP325-201ENST00000363756 130 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-219P-201ENST00000364728 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 Y_RNA.558-201ENST00000384685 113 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR516B1-201ENST00000385211 90 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR548H2-201ENST00000408874 88 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 Y_RNA.620-201ENST00000411009 88 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-848P-201ENST00000515948 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-617P-201ENST00000516147 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-473P-201ENST00000516164 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 SNORA25.13-201ENST00000516395 103 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-1049P-201ENST00000516414 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 SNORA62.5-201ENST00000516634 120 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR1273G-201ENST00000577677 100 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR4796-201ENST00000580742 81 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 AC104408.1-201ENST00000605241 170 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 SNORD114-26-201ENST00000363543 72 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 RNU6-844P-201ENST00000517175 102 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 MIR4315-1-201ENST00000636800 73 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 MIR4315-2-201ENST00000640925 73 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 SNORA63.2-201ENST00000362603 126 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 SNORD114-5-201ENST00000362928 70 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 RNU6-1134P-201ENST00000365156 101 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 SNORD116-22-201ENST00000384430 92 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 MIR593-201ENST00000384856 100 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 MIR1236-201ENST00000408340 102 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 snoU13.17-201ENST00000458802 104 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 U7.6-201ENST00000610841 64 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.14□□□□□ -2.39
HOXA1P49639 RNA5SP214-201ENST00000363378 118 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 Y_RNA.258-201ENST00000364613 105 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 Y_RNA.437-201ENST00000384113 113 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 SNORA24B-201ENST00000384176 131 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR106A-201ENST00000384870 81 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR519C-201ENST00000385053 87 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 SNORD42B-201ENST00000458893 67 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 SCARNA11.2-201ENST00000517183 154 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR4514-201ENST00000581410 57 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 AC084368.1-201ENST00000620935 65 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR924-201ENST00000638017 53 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.17-201ENST00000362433 111 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 RNU6-633P-201ENST00000362612 103 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.205-201ENST00000364128 113 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.407-201ENST00000383986 113 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 RNU6-154P-201ENST00000384306 106 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 MIR652-201ENST00000385278 98 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.593-201ENST00000410292 98 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 RNU7-188P-201ENST00000517063 64 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 171.4 ms