Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC021146.6-201ENST00000514659 117 ntBASIC-0.79□□□□□ -2.54
RFX3P48380 MIR548AX-201ENST00000580117 73 ntBASIC-0.79□□□□□ -2.54
RFX3P48380 RNU6-502P-201ENST00000362419 108 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 RNU6-973P-201ENST00000364690 107 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 SNORD22.1-201ENST00000516331 125 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 RNU6-781P-201ENST00000516377 101 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 RNU6-881P-201ENST00000516813 102 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 MIR3179-1-201ENST00000578940 84 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 MIR3179-2-201ENST00000579107 84 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 MIR3179-3-201ENST00000579566 84 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 MIR3179-4-201ENST00000617599 84 ntBASIC-0.8□□□□□ -2.54
RFX3P48380 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 Y_RNA.420-201ENST00000384043 110 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.81□□□□□ -2.54
RFX3P48380 RNU6-816P-201ENST00000390914 107 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 RNU6-394P-201ENST00000410735 107 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 RNU6-719P-201ENST00000516671 104 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 AC025521.1-201ENST00000621624 286 ntBASIC-0.81□□□□□ -2.54
RFX3P48380 Y_RNA.188-201ENST00000363952 111 ntBASIC-0.82□□□□□ -2.54
RFX3P48380 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.82□□□□□ -2.54
RFX3P48380 SNORD116-18-201ENST00000383961 92 ntBASIC-0.82□□□□□ -2.54
RFX3P48380 RNU6-574P-201ENST00000384265 107 ntBASIC-0.82□□□□□ -2.54
RFX3P48380 RNU6-905P-201ENST00000384434 107 ntBASIC-0.82□□□□□ -2.54
RFX3P48380 MIR517B-201ENST00000385102 67 ntBASIC-0.82□□□□□ -2.54
RFX3P48380 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.82□□□□□ -2.54
RFX3P48380 SNORD114-25-201ENST00000363742 72 ntBASIC-0.83□□□□□ -2.54
RFX3P48380 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.83□□□□□ -2.54
RFX3P48380 RNY1P7-201ENST00000384743 110 ntBASIC-0.83□□□□□ -2.54
RFX3P48380 FGF7P7-201ENST00000514120 227 ntBASIC-0.83□□□□□ -2.54
RFX3P48380 RNU6-379P-201ENST00000363813 104 ntBASIC-0.84□□□□□ -2.54
RFX3P48380 MT-TG-201ENST00000387429 68 ntBASIC-0.84□□□□□ -2.54
RFX3P48380 AP000533.3-201ENST00000447704 118 ntBASIC-0.84□□□□□ -2.54
RFX3P48380 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.84□□□□□ -2.54
RFX3P48380 AC025166.1-201ENST00000612411 163 ntBASIC-0.84□□□□□ -2.54
RFX3P48380 AC004792.1-201ENST00000614523 137 ntBASIC-0.84□□□□□ -2.54
RFX3P48380 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.84□□□□□ -2.54
RFX3P48380 Y_RNA.144-201ENST00000363521 113 ntBASIC-0.85□□□□□ -2.55
RFX3P48380 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.85□□□□□ -2.55
RFX3P48380 MIR518B-201ENST00000385127 83 ntBASIC-0.85□□□□□ -2.55
RFX3P48380 MIR196A1-201ENST00000388006 70 ntBASIC-0.85□□□□□ -2.55
RFX3P48380 AC022137.1-201ENST00000483735 151 ntBASIC-0.85□□□□□ -2.55
RFX3P48380 MIR6773-201ENST00000612812 74 ntBASIC-0.85□□□□□ -2.55
RFX3P48380 MIR6854-201ENST00000614935 69 ntBASIC-0.85□□□□□ -2.55
RFX3P48380 MIR409-201ENST00000362237 79 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 RNU4-36P-201ENST00000364294 144 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 RNU6-132P-201ENST00000383863 107 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 RNU6-592P-201ENST00000411333 103 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 RNU7-85P-201ENST00000458851 63 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.86□□□□□ -2.55
RFX3P48380 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.86□□□□□ -2.55
RFX3P48380 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 RNU6-990P-201ENST00000364385 104 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 SNORD58C-201ENST00000365223 64 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 RNU6-337P-201ENST00000391243 106 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 RNU6-65P-201ENST00000516332 98 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 MIR4694-201ENST00000578534 80 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 MIR3140-201ENST00000583685 90 ntBASIC-0.87□□□□□ -2.55
RFX3P48380 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.88□□□□□ -2.55
RFX3P48380 MIR577-201ENST00000385196 96 ntBASIC-0.88□□□□□ -2.55
RFX3P48380 SNORD57-201ENST00000448188 72 ntBASIC-0.88□□□□□ -2.55
RFX3P48380 AL500527.2-201ENST00000454105 95 ntBASIC-0.88□□□□□ -2.55
RFX3P48380 MIR4536-1-201ENST00000583537 88 ntBASIC-0.88□□□□□ -2.55
RFX3P48380 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 MIRLET7B-201ENST00000385140 83 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 MIR569-201ENST00000385228 96 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 RNA5SP272-201ENST00000516095 111 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 MIR4679-2-201ENST00000578358 77 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 MIR3144-201ENST00000579460 79 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 MIR4439-201ENST00000583746 80 ntBASIC-0.89□□□□□ -2.55
RFX3P48380 SNORD115-23-201ENST00000364461 82 ntBASIC-0.9□□□□□ -2.55
RFX3P48380 SNORA63.6-201ENST00000364921 119 ntBASIC-0.9□□□□□ -2.55
RFX3P48380 SNORD50.2-201ENST00000365465 70 ntBASIC-0.9□□□□□ -2.55
RFX3P48380 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.9□□□□□ -2.55
RFX3P48380 RNU6-388P-201ENST00000517012 105 ntBASIC-0.9□□□□□ -2.55
RFX3P48380 RNU6-389P-201ENST00000517048 105 ntBASIC-0.9□□□□□ -2.55
RFX3P48380 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.9□□□□□ -2.55
RFX3P48380 AL035470.1-201ENST00000622571 220 ntBASIC-0.9□□□□□ -2.55
RFX3P48380 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.91□□□□□ -2.56
RFX3P48380 RNY1P9-201ENST00000532431 109 ntBASIC-0.91□□□□□ -2.56
RFX3P48380 AL513043.2-201ENST00000573941 143 ntBASIC-0.91□□□□□ -2.56
RFX3P48380 MIR3613-201ENST00000579844 87 ntBASIC-0.91□□□□□ -2.56
RFX3P48380 MIR4719-201ENST00000585233 84 ntBASIC-0.91□□□□□ -2.56
RFX3P48380 AC090617.8-201ENST00000623339 167 ntBASIC-0.91□□□□□ -2.56
RFX3P48380 snoR1.1-201ENST00000628177 80 ntBASIC-0.91□□□□□ -2.56
RFX3P48380 RNU6-804P-201ENST00000384286 107 ntBASIC-0.92□□□□□ -2.56
RFX3P48380 RNY3P2-201ENST00000362918 102 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 RNU6-832P-201ENST00000363319 107 ntBASIC-0.93□□□□□ -2.56
RFX3P48380 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.93□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms