Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MIR501-201ENST00000390204 84 ntBASIC0.19□□□□□ -2.38
HNF4AP41235 RNA5SP292-201ENST00000390974 118 ntBASIC0.19□□□□□ -2.38
HNF4AP41235 RNU7-129P-201ENST00000516128 62 ntBASIC0.19□□□□□ -2.38
HNF4AP41235 Y_RNA.677-201ENST00000516401 85 ntBASIC0.19□□□□□ -2.38
HNF4AP41235 RN7SL793P-201ENST00000583259 296 ntBASIC0.19□□□□□ -2.38
HNF4AP41235 MALAT1.1-201ENST00000618249 95 ntBASIC0.19□□□□□ -2.38
HNF4AP41235 MIR451A-201ENST00000385059 72 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 MT-TY-201ENST00000387409 66 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 RNU6-127P-201ENST00000390897 107 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
HNF4AP41235 RNU6-1052P-201ENST00000411398 104 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 RNU6-719P-201ENST00000516671 104 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 RNU5B-6P-201ENST00000516765 68 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 RNU6-1057P-201ENST00000517162 102 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 MIR4460-201ENST00000577862 86 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 YWHAEP2-201ENST00000580066 112 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 AC104996.3-201ENST00000590718 94 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 AC069503.3-201ENST00000618674 145 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.18□□□□□ -2.38
HNF4AP41235 RNU4-32P-201ENST00000363404 141 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 RNU6-811P-201ENST00000384069 107 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 MIR193B-201ENST00000384907 83 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 MIR548U-201ENST00000390728 81 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 SNORA18.5-201ENST00000516616 101 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 SNORA62.5-201ENST00000516634 120 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 MIR548AD-201ENST00000584780 82 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 MIR4315-1-201ENST00000636800 73 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 MIR924-201ENST00000638017 53 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 MIR4315-2-201ENST00000640925 73 ntBASIC0.17□□□□□ -2.38
HNF4AP41235 Y_RNA.125-201ENST00000363371 111 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 Y_RNA.491-201ENST00000384417 107 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 RNY1P7-201ENST00000384743 110 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 SNORD90-201ENST00000391145 111 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 MIR4514-201ENST00000581410 57 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 MIR4677-201ENST00000584153 80 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 AC010487.4-201ENST00000637027 61 ntBASIC0.16□□□□□ -2.38
HNF4AP41235 MIR1295A-201ENST00000408463 79 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 FGF7P7-201ENST00000514120 227 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 MIR3140-201ENST00000583685 90 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 MIR4473-201ENST00000583731 91 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 MIR3925-201ENST00000584674 77 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 U7.6-201ENST00000610841 64 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 MIR548O2-201ENST00000616090 70 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 MIR7111-201ENST00000619751 72 ntBASIC0.15□□□□□ -2.39
HNF4AP41235 SNORD115-27-201ENST00000364430 82 ntBASIC0.14□□□□□ -2.39
HNF4AP41235 RNU6V-201ENST00000384105 107 ntBASIC0.14□□□□□ -2.39
HNF4AP41235 MIR643-201ENST00000385267 97 ntBASIC0.14□□□□□ -2.39
HNF4AP41235 U3.27-201ENST00000391237 200 ntBASIC0.14□□□□□ -2.39
HNF4AP41235 SNORA25.13-201ENST00000516395 103 ntBASIC0.14□□□□□ -2.39
HNF4AP41235 RNU6-1051P-201ENST00000365471 102 ntBASIC0.13□□□□□ -2.39
HNF4AP41235 MIR216B-201ENST00000390186 82 ntBASIC0.13□□□□□ -2.39
HNF4AP41235 RNU7-153P-201ENST00000516455 62 ntBASIC0.13□□□□□ -2.39
HNF4AP41235 MIR4668-201ENST00000582284 70 ntBASIC0.13□□□□□ -2.39
HNF4AP41235 MIR548AE1-201ENST00000583292 70 ntBASIC0.13□□□□□ -2.39
HNF4AP41235 SNORA63.2-201ENST00000362603 126 ntBASIC0.12□□□□□ -2.39
HNF4AP41235 RNA5SP214-201ENST00000363378 118 ntBASIC0.12□□□□□ -2.39
HNF4AP41235 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
HNF4AP41235 MIR548H2-201ENST00000408874 88 ntBASIC0.12□□□□□ -2.39
HNF4AP41235 RNA5SP480-201ENST00000516840 109 ntBASIC0.12□□□□□ -2.39
HNF4AP41235 RNU6-782P-201ENST00000516852 104 ntBASIC0.12□□□□□ -2.39
HNF4AP41235 MIR1273G-201ENST00000577677 100 ntBASIC0.12□□□□□ -2.39
HNF4AP41235 RNU6-1131P-201ENST00000364955 107 ntBASIC0.11□□□□□ -2.39
HNF4AP41235 RNU6-54P-201ENST00000365563 107 ntBASIC0.11□□□□□ -2.39
HNF4AP41235 RNU6-49P-201ENST00000384256 107 ntBASIC0.11□□□□□ -2.39
HNF4AP41235 MIR516B1-201ENST00000385211 90 ntBASIC0.11□□□□□ -2.39
HNF4AP41235 MIR1236-201ENST00000408340 102 ntBASIC0.11□□□□□ -2.39
HNF4AP41235 AC104408.1-201ENST00000605241 170 ntBASIC0.11□□□□□ -2.39
HNF4AP41235 uc_338.10-201ENST00000621872 182 ntBASIC0.11□□□□□ -2.39
HNF4AP41235 Y_RNA.220-201ENST00000364244 109 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 SNORD114-9-201ENST00000364370 72 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 RNU6-652P-201ENST00000365488 107 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 Y_RNA.437-201ENST00000384113 113 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 SNORA24B-201ENST00000384176 131 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 RNY4P30-201ENST00000410216 95 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 Y_RNA.620-201ENST00000411009 88 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 RNU6-267P-201ENST00000516714 103 ntBASIC0.1□□□□□ -2.39
HNF4AP41235 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.09□□□□□ -2.39
HNF4AP41235 RNU6-633P-201ENST00000362612 103 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 RNU6-161P-201ENST00000363051 106 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 SNORA42.1-201ENST00000363515 137 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 RNA5SP325-201ENST00000363756 130 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 RNU6-219P-201ENST00000364728 107 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 Y_RNA.407-201ENST00000383986 113 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 SNORD116-22-201ENST00000384430 92 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 Y_RNA.558-201ENST00000384685 113 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 RNU6-402P-201ENST00000410678 103 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 snoU13.17-201ENST00000458802 104 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 SCARNA11.2-201ENST00000517183 154 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 MIR4796-201ENST00000580742 81 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 AC084368.1-201ENST00000620935 65 ntBASIC0.09□□□□□ -2.4
HNF4AP41235 Y_RNA.205-201ENST00000364128 113 ntBASIC0.08□□□□□ -2.4
HNF4AP41235 MIR519C-201ENST00000385053 87 ntBASIC0.08□□□□□ -2.4
HNF4AP41235 MIR652-201ENST00000385278 98 ntBASIC0.08□□□□□ -2.4
HNF4AP41235 MTATP6P29-201ENST00000415057 132 ntBASIC0.08□□□□□ -2.4
HNF4AP41235 SNORD42B-201ENST00000458893 67 ntBASIC0.08□□□□□ -2.4
HNF4AP41235 RNU6-844P-201ENST00000517175 102 ntBASIC0.08□□□□□ -2.4
HNF4AP41235 RNU6-154P-201ENST00000384306 106 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 184.4 ms