Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU6-919P-201ENST00000516731 104 ntBASIC0.12□□□□□ -2.39
SOX3P41225 RNU5B-6P-201ENST00000516765 68 ntBASIC0.12□□□□□ -2.39
SOX3P41225 Y_RNA.705-201ENST00000516862 110 ntBASIC0.12□□□□□ -2.39
SOX3P41225 MIR548AE1-201ENST00000583292 70 ntBASIC0.12□□□□□ -2.39
SOX3P41225 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.12□□□□□ -2.39
SOX3P41225 Y_RNA.818-201ENST00000618813 71 ntBASIC0.12□□□□□ -2.39
SOX3P41225 RNU6-161P-201ENST00000363051 106 ntBASIC0.11□□□□□ -2.39
SOX3P41225 Y_RNA.125-201ENST00000363371 111 ntBASIC0.11□□□□□ -2.39
SOX3P41225 Y_RNA.290-201ENST00000364879 114 ntBASIC0.11□□□□□ -2.39
SOX3P41225 RNA5SP292-201ENST00000390974 118 ntBASIC0.11□□□□□ -2.39
SOX3P41225 MTATP8P2-201ENST00000435212 202 ntBASIC0.11□□□□□ -2.39
SOX3P41225 AL031737.1-201ENST00000450125 223 ntBASIC0.11□□□□□ -2.39
SOX3P41225 AC026421.1-201ENST00000519101 163 ntBASIC0.11□□□□□ -2.39
SOX3P41225 MIR4536-1-201ENST00000583537 88 ntBASIC0.11□□□□□ -2.39
SOX3P41225 AC104408.1-201ENST00000605241 170 ntBASIC0.11□□□□□ -2.39
SOX3P41225 U7.3-201ENST00000616123 62 ntBASIC0.11□□□□□ -2.39
SOX3P41225 Y_RNA.93-201ENST00000363066 109 ntBASIC0.1□□□□□ -2.39
SOX3P41225 SNORA42.1-201ENST00000363515 137 ntBASIC0.1□□□□□ -2.39
SOX3P41225 SNORD114-9-201ENST00000364370 72 ntBASIC0.1□□□□□ -2.39
SOX3P41225 Y_RNA.348-201ENST00000365403 103 ntBASIC0.1□□□□□ -2.39
SOX3P41225 MT-TY-201ENST00000387409 66 ntBASIC0.1□□□□□ -2.39
SOX3P41225 MIR3064-201ENST00000581130 66 ntBASIC0.1□□□□□ -2.39
SOX3P41225 MIR4473-201ENST00000583731 91 ntBASIC0.1□□□□□ -2.39
SOX3P41225 U7.6-201ENST00000610841 64 ntBASIC0.1□□□□□ -2.39
SOX3P41225 AP001318.4-201ENST00000616637 121 ntBASIC0.1□□□□□ -2.39
SOX3P41225 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.1□□□□□ -2.39
SOX3P41225 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.1□□□□□ -2.39
SOX3P41225 RNA5SP257-201ENST00000363023 116 ntBASIC0.09□□□□□ -2.4
SOX3P41225 RNA5SP214-201ENST00000363378 118 ntBASIC0.09□□□□□ -2.4
SOX3P41225 RNU6-972P-201ENST00000391208 107 ntBASIC0.09□□□□□ -2.4
SOX3P41225 RNU6-1052P-201ENST00000411398 104 ntBASIC0.09□□□□□ -2.4
SOX3P41225 RNU6-719P-201ENST00000516671 104 ntBASIC0.09□□□□□ -2.4
SOX3P41225 YWHAEP2-201ENST00000580066 112 ntBASIC0.09□□□□□ -2.4
SOX3P41225 RNU6-640P-201ENST00000363693 105 ntBASIC0.08□□□□□ -2.4
SOX3P41225 MIR488-201ENST00000365739 83 ntBASIC0.08□□□□□ -2.4
SOX3P41225 RNU6-1113P-201ENST00000384348 107 ntBASIC0.08□□□□□ -2.4
SOX3P41225 MIR451A-201ENST00000385059 72 ntBASIC0.08□□□□□ -2.4
SOX3P41225 RNU6-935P-201ENST00000410371 100 ntBASIC0.08□□□□□ -2.4
SOX3P41225 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.08□□□□□ -2.4
SOX3P41225 RNU6-65P-201ENST00000516332 98 ntBASIC0.08□□□□□ -2.4
SOX3P41225 RNU6-782P-201ENST00000516852 104 ntBASIC0.08□□□□□ -2.4
SOX3P41225 MIR4460-201ENST00000577862 86 ntBASIC0.08□□□□□ -2.4
SOX3P41225 MIR548AI-201ENST00000579940 88 ntBASIC0.08□□□□□ -2.4
SOX3P41225 MIR3140-201ENST00000583685 90 ntBASIC0.08□□□□□ -2.4
SOX3P41225 MIR2909-201ENST00000617113 69 ntBASIC0.08□□□□□ -2.4
SOX3P41225 AC069503.3-201ENST00000618674 145 ntBASIC0.08□□□□□ -2.4
SOX3P41225 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.08□□□□□ -2.4
SOX3P41225 SNORD114-5-201ENST00000362928 70 ntBASIC0.07□□□□□ -2.4
SOX3P41225 RNU6-905P-201ENST00000384434 107 ntBASIC0.07□□□□□ -2.4
SOX3P41225 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
SOX3P41225 RNU6-519P-201ENST00000410590 108 ntBASIC0.07□□□□□ -2.4
SOX3P41225 SNORA25.13-201ENST00000516395 103 ntBASIC0.07□□□□□ -2.4
SOX3P41225 RNU6-158P-201ENST00000517104 100 ntBASIC0.07□□□□□ -2.4
SOX3P41225 MIR4768-201ENST00000585270 74 ntBASIC0.07□□□□□ -2.4
SOX3P41225 MIR548O2-201ENST00000616090 70 ntBASIC0.07□□□□□ -2.4
SOX3P41225 Y_RNA.239-201ENST00000364444 113 ntBASIC0.06□□□□□ -2.4
SOX3P41225 RNU6-54P-201ENST00000365563 107 ntBASIC0.06□□□□□ -2.4
SOX3P41225 RNU6V-201ENST00000384105 107 ntBASIC0.06□□□□□ -2.4
SOX3P41225 Y_RNA.544-201ENST00000384650 113 ntBASIC0.06□□□□□ -2.4
SOX3P41225 MIR593-201ENST00000384856 100 ntBASIC0.06□□□□□ -2.4
SOX3P41225 Y_RNA.609-201ENST00000410669 89 ntBASIC0.06□□□□□ -2.4
SOX3P41225 AC104996.3-201ENST00000590718 94 ntBASIC0.06□□□□□ -2.4
SOX3P41225 SNORD116-10-201ENST00000363791 102 ntBASIC0.05□□□□□ -2.4
SOX3P41225 SNORD115-27-201ENST00000364430 82 ntBASIC0.05□□□□□ -2.4
SOX3P41225 RNU6-652P-201ENST00000365488 107 ntBASIC0.05□□□□□ -2.4
SOX3P41225 SNORA24B-201ENST00000384176 131 ntBASIC0.05□□□□□ -2.4
SOX3P41225 MIR145-201ENST00000384967 88 ntBASIC0.05□□□□□ -2.4
SOX3P41225 MIR610-201ENST00000385139 96 ntBASIC0.05□□□□□ -2.4
SOX3P41225 MIR516B1-201ENST00000385211 90 ntBASIC0.05□□□□□ -2.4
SOX3P41225 Y_RNA.681-201ENST00000516445 113 ntBASIC0.05□□□□□ -2.4
SOX3P41225 SCARNA11.2-201ENST00000517183 154 ntBASIC0.05□□□□□ -2.4
SOX3P41225 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.05□□□□□ -2.4
SOX3P41225 RN7SL660P-201ENST00000614852 299 ntBASIC0.05□□□□□ -2.4
SOX3P41225 SNORD114-16-201ENST00000363044 70 ntBASIC0.04□□□□□ -2.4
SOX3P41225 RNU4-32P-201ENST00000363404 141 ntBASIC0.04□□□□□ -2.4
SOX3P41225 RNU6-811P-201ENST00000384069 107 ntBASIC0.04□□□□□ -2.4
SOX3P41225 Y_RNA.495-201ENST00000384435 112 ntBASIC0.04□□□□□ -2.4
SOX3P41225 MIR876-201ENST00000401147 81 ntBASIC0.04□□□□□ -2.4
SOX3P41225 SNORD42B-201ENST00000458893 67 ntBASIC0.04□□□□□ -2.4
SOX3P41225 FGF7P7-201ENST00000514120 227 ntBASIC0.04□□□□□ -2.4
SOX3P41225 SNORA18.5-201ENST00000516616 101 ntBASIC0.04□□□□□ -2.4
SOX3P41225 MIR4743-201ENST00000584576 69 ntBASIC0.04□□□□□ -2.4
SOX3P41225 MIR371B-201ENST00000638082 66 ntBASIC0.04□□□□□ -2.4
SOX3P41225 Y_RNA.30-201ENST00000362572 97 ntBASIC0.03□□□□□ -2.4
SOX3P41225 RNU6-302P-201ENST00000365249 107 ntBASIC0.03□□□□□ -2.4
SOX3P41225 Y_RNA.374-201ENST00000365606 101 ntBASIC0.03□□□□□ -2.4
SOX3P41225 Y_RNA.491-201ENST00000384417 107 ntBASIC0.03□□□□□ -2.4
SOX3P41225 MIR106A-201ENST00000384870 81 ntBASIC0.03□□□□□ -2.4
SOX3P41225 RNU6-175P-201ENST00000516896 107 ntBASIC0.03□□□□□ -2.4
SOX3P41225 RNU7-188P-201ENST00000517063 64 ntBASIC0.03□□□□□ -2.4
SOX3P41225 MIR5190-201ENST00000581537 80 ntBASIC0.03□□□□□ -2.4
SOX3P41225 Y_RNA.437-201ENST00000384113 113 ntBASIC0.02□□□□□ -2.41
SOX3P41225 RNY1P7-201ENST00000384743 110 ntBASIC0.02□□□□□ -2.41
SOX3P41225 MIR652-201ENST00000385278 98 ntBASIC0.02□□□□□ -2.41
SOX3P41225 MIR892B-201ENST00000401279 77 ntBASIC0.02□□□□□ -2.41
SOX3P41225 RNU7-153P-201ENST00000516455 62 ntBASIC0.02□□□□□ -2.41
SOX3P41225 RNU6-762P-201ENST00000517107 102 ntBASIC0.02□□□□□ -2.41
SOX3P41225 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
SOX3P41225 MALAT1.1-201ENST00000618249 95 ntBASIC0.02□□□□□ -2.41
SOX3P41225 RNU6-153P-201ENST00000364422 104 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms