Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 MIR1297-201ENST00000637311 77 ntBASIC1.35□□□□□ -2.19
RFX1P22670 RNU6-1126P-201ENST00000384002 107 ntBASIC1.34□□□□□ -2.19
RFX1P22670 RNU6-411P-201ENST00000384451 107 ntBASIC1.34□□□□□ -2.19
RFX1P22670 AC074348.1-201ENST00000426503 132 ntBASIC1.34□□□□□ -2.19
RFX1P22670 YWHAEP2-201ENST00000580066 112 ntBASIC1.34□□□□□ -2.19
RFX1P22670 YWHAEP3-201ENST00000582767 121 ntBASIC1.34□□□□□ -2.19
RFX1P22670 MIR6788-201ENST00000618842 66 ntBASIC1.34□□□□□ -2.19
RFX1P22670 RNY4P3-201ENST00000365254 95 ntBASIC1.33□□□□□ -2.2
RFX1P22670 RNU6-70P-201ENST00000516438 60 ntBASIC1.33□□□□□ -2.2
RFX1P22670 RNU6-1057P-201ENST00000517162 102 ntBASIC1.33□□□□□ -2.2
RFX1P22670 MIR548AG2-201ENST00000581228 64 ntBASIC1.33□□□□□ -2.2
RFX1P22670 PVT1_3.1-201ENST00000620853 95 ntBASIC1.33□□□□□ -2.2
RFX1P22670 MIR664A-201ENST00000626086 82 ntBASIC1.33□□□□□ -2.2
RFX1P22670 RNU6-788P-201ENST00000390967 104 ntBASIC1.32□□□□□ -2.2
RFX1P22670 SNORD41.1-201ENST00000391000 69 ntBASIC1.32□□□□□ -2.2
RFX1P22670 MIR2113-201ENST00000459007 91 ntBASIC1.32□□□□□ -2.2
RFX1P22670 AC114801.3-201ENST00000510231 177 ntBASIC1.32□□□□□ -2.2
RFX1P22670 RNU6-1015P-201ENST00000517121 99 ntBASIC1.32□□□□□ -2.2
RFX1P22670 MIR6828-201ENST00000636181 60 ntBASIC1.32□□□□□ -2.2
RFX1P22670 RNU1-93P-201ENST00000364704 169 ntBASIC1.31□□□□□ -2.2
RFX1P22670 Y_RNA.371-201ENST00000365591 113 ntBASIC1.31□□□□□ -2.2
RFX1P22670 MIR451A-201ENST00000385059 72 ntBASIC1.31□□□□□ -2.2
RFX1P22670 RNU6-1052P-201ENST00000411398 104 ntBASIC1.31□□□□□ -2.2
RFX1P22670 AC087343.1-201ENST00000477341 475 ntBASIC1.31□□□□□ -2.2
RFX1P22670 Y_RNA.681-201ENST00000516445 113 ntBASIC1.31□□□□□ -2.2
RFX1P22670 RNU6-719P-201ENST00000516671 104 ntBASIC1.31□□□□□ -2.2
RFX1P22670 SCARNA16.5-201ENST00000517114 183 ntBASIC1.31□□□□□ -2.2
RFX1P22670 MIR4295-201ENST00000585286 85 ntBASIC1.31□□□□□ -2.2
RFX1P22670 MIR608-201ENST00000384820 100 ntBASIC1.3□□□□□ -2.2
RFX1P22670 MIR617-201ENST00000385030 97 ntBASIC1.3□□□□□ -2.2
RFX1P22670 U3.27-201ENST00000391237 200 ntBASIC1.3□□□□□ -2.2
RFX1P22670 MIR548J-201ENST00000408833 112 ntBASIC1.3□□□□□ -2.2
RFX1P22670 RNU6-340P-201ENST00000364005 107 ntBASIC1.29□□□□□ -2.2
RFX1P22670 RNU6-726P-201ENST00000364680 107 ntBASIC1.29□□□□□ -2.2
RFX1P22670 SNORA24B-201ENST00000384176 131 ntBASIC1.29□□□□□ -2.2
RFX1P22670 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.29□□□□□ -2.2
RFX1P22670 RNU6-687P-201ENST00000516443 89 ntBASIC1.29□□□□□ -2.2
RFX1P22670 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.28□□□□□ -2.2
RFX1P22670 RNU6-330P-201ENST00000363015 107 ntBASIC1.28□□□□□ -2.2
RFX1P22670 Y_RNA.205-201ENST00000364128 113 ntBASIC1.28□□□□□ -2.2
RFX1P22670 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
RFX1P22670 RNA5SP222-201ENST00000411039 105 ntBASIC1.28□□□□□ -2.2
RFX1P22670 RNU7-74P-201ENST00000459104 62 ntBASIC1.28□□□□□ -2.2
RFX1P22670 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.28□□□□□ -2.2
RFX1P22670 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.28□□□□□ -2.2
RFX1P22670 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
RFX1P22670 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
RFX1P22670 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
RFX1P22670 RNU6-154P-201ENST00000384306 106 ntBASIC1.27□□□□□ -2.21
RFX1P22670 MIR216B-201ENST00000390186 82 ntBASIC1.27□□□□□ -2.21
RFX1P22670 MIR548L-201ENST00000408303 86 ntBASIC1.26□□□□□ -2.21
RFX1P22670 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.26□□□□□ -2.21
RFX1P22670 AC097510.1-201ENST00000510945 133 ntBASIC1.26□□□□□ -2.21
RFX1P22670 RNU6-871P-201ENST00000516122 100 ntBASIC1.26□□□□□ -2.21
RFX1P22670 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
RFX1P22670 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.25□□□□□ -2.21
RFX1P22670 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
RFX1P22670 RNU6-824P-201ENST00000363724 104 ntBASIC1.25□□□□□ -2.21
RFX1P22670 SNORA8.1-201ENST00000384250 140 ntBASIC1.25□□□□□ -2.21
RFX1P22670 MIR519E-201ENST00000385075 84 ntBASIC1.25□□□□□ -2.21
RFX1P22670 RNU6-587P-201ENST00000391282 106 ntBASIC1.25□□□□□ -2.21
RFX1P22670 RNU2-59P-201ENST00000410482 191 ntBASIC1.25□□□□□ -2.21
RFX1P22670 Y_RNA.606-201ENST00000410579 103 ntBASIC1.25□□□□□ -2.21
RFX1P22670 RNU6-634P-201ENST00000459134 106 ntBASIC1.25□□□□□ -2.21
RFX1P22670 RNA5SP94-201ENST00000516917 108 ntBASIC1.24□□□□□ -2.21
RFX1P22670 U6.81-201ENST00000612550 106 ntBASIC1.24□□□□□ -2.21
RFX1P22670 SNORA36.1-201ENST00000363424 132 ntBASIC1.23□□□□□ -2.21
RFX1P22670 RNU6-681P-201ENST00000364012 104 ntBASIC1.23□□□□□ -2.21
RFX1P22670 RNU6-716P-201ENST00000365621 103 ntBASIC1.23□□□□□ -2.21
RFX1P22670 RNU6-110P-201ENST00000384508 104 ntBASIC1.23□□□□□ -2.21
RFX1P22670 RNU6-1241P-201ENST00000384536 107 ntBASIC1.23□□□□□ -2.21
RFX1P22670 MIR1285-1-201ENST00000408593 84 ntBASIC1.23□□□□□ -2.21
RFX1P22670 RNU6-539P-201ENST00000516665 103 ntBASIC1.23□□□□□ -2.21
RFX1P22670 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
RFX1P22670 ACA64.5-201ENST00000516207 127 ntBASIC1.22□□□□□ -2.21
RFX1P22670 RNU6-590P-201ENST00000365039 107 ntBASIC1.21□□□□□ -2.22
RFX1P22670 MIR154-201ENST00000385243 84 ntBASIC1.21□□□□□ -2.22
RFX1P22670 RNU6-1177P-201ENST00000391058 104 ntBASIC1.21□□□□□ -2.22
RFX1P22670 Y_RNA.258-201ENST00000364613 105 ntBASIC1.2□□□□□ -2.22
RFX1P22670 RNA5SP227-201ENST00000516184 113 ntBASIC1.2□□□□□ -2.22
RFX1P22670 MIR3675-201ENST00000583661 73 ntBASIC1.2□□□□□ -2.22
RFX1P22670 AC211469.2-201ENST00000605461 205 ntBASIC1.2□□□□□ -2.22
RFX1P22670 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
RFX1P22670 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.2□□□□□ -2.22
RFX1P22670 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
RFX1P22670 SNORD115-31-201ENST00000365318 82 ntBASIC1.19□□□□□ -2.22
RFX1P22670 MIR216A-201ENST00000385063 110 ntBASIC1.19□□□□□ -2.22
RFX1P22670 RNA5SP268-201ENST00000516828 124 ntBASIC1.19□□□□□ -2.22
RFX1P22670 RNU6-382P-201ENST00000365181 106 ntBASIC1.18□□□□□ -2.22
RFX1P22670 RNU6-540P-201ENST00000384622 101 ntBASIC1.18□□□□□ -2.22
RFX1P22670 MIR4773-1-201ENST00000637203 78 ntBASIC1.18□□□□□ -2.22
RFX1P22670 SNORA36.2-201ENST00000384004 127 ntBASIC1.17□□□□□ -2.22
RFX1P22670 RNU6-649P-201ENST00000384463 107 ntBASIC1.17□□□□□ -2.22
RFX1P22670 RNU6-269P-201ENST00000391077 97 ntBASIC1.17□□□□□ -2.22
RFX1P22670 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.17□□□□□ -2.22
RFX1P22670 AC093423.1-201ENST00000440817 142 ntBASIC1.17□□□□□ -2.22
RFX1P22670 MIR5000-201ENST00000577717 103 ntBASIC1.17□□□□□ -2.22
RFX1P22670 RN7SL793P-201ENST00000583259 296 ntBASIC1.17□□□□□ -2.22
RFX1P22670 SNORA8.2-201ENST00000384372 139 ntBASIC1.16□□□□□ -2.22
RFX1P22670 SNORD30.1-201ENST00000391309 70 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 206 ms