Protein–RNA interactions for Protein: P16070

CD44, CD44 antigen, humanhuman

Known RBP Predictions only

Length 742 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD44P16070 MIR221-201ENST00000385135 110 ntBASIC2.46□□□□□ -2.02
CD44P16070 RN7SKP88-201ENST00000516847 250 ntBASIC2.46□□□□□ -2.02
CD44P16070 7SK.8-201ENST00000612110 250 ntBASIC2.46□□□□□ -2.02
CD44P16070 7SK.13-201ENST00000622040 250 ntBASIC2.46□□□□□ -2.02
CD44P16070 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CD44P16070 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CD44P16070 RNA5SP492-201ENST00000411330 114 ntBASIC2.45□□□□□ -2.02
CD44P16070 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.45□□□□□ -2.02
CD44P16070 MIR3162-201ENST00000581818 82 ntBASIC2.44□□□□□ -2.02
CD44P16070 MIR29B1-201ENST00000385015 81 ntBASIC2.43□□□□□ -2.02
CD44P16070 SCARNA16.5-201ENST00000517114 183 ntBASIC2.43□□□□□ -2.02
CD44P16070 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CD44P16070 MIRLET7G-201ENST00000362280 84 ntBASIC2.42□□□□□ -2.02
CD44P16070 RNU6-337P-201ENST00000391243 106 ntBASIC2.42□□□□□ -2.02
CD44P16070 RNU6-995P-201ENST00000391244 107 ntBASIC2.42□□□□□ -2.02
CD44P16070 SUMO1P4-201ENST00000429430 302 ntBASIC2.42□□□□□ -2.02
CD44P16070 U7.7-201ENST00000459276 60 ntBASIC2.42□□□□□ -2.02
CD44P16070 SNORD79.1-201ENST00000516069 84 ntBASIC2.42□□□□□ -2.02
CD44P16070 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
CD44P16070 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
CD44P16070 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
CD44P16070 RNU6-910P-201ENST00000390844 107 ntBASIC2.41□□□□□ -2.02
CD44P16070 AC006210.1-201ENST00000424882 111 ntBASIC2.41□□□□□ -2.02
CD44P16070 RNA5SP24-201ENST00000516478 95 ntBASIC2.41□□□□□ -2.02
CD44P16070 AL049779.4-201ENST00000604500 156 ntBASIC2.41□□□□□ -2.02
CD44P16070 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.41□□□□□ -2.02
CD44P16070 Y_RNA.139-201ENST00000363464 102 ntBASIC2.4□□□□□ -2.03
CD44P16070 SNORD45.2-201ENST00000363552 72 ntBASIC2.4□□□□□ -2.03
CD44P16070 SNORD23.1-201ENST00000408212 104 ntBASIC2.4□□□□□ -2.03
CD44P16070 RNA5SP470-201ENST00000516463 106 ntBASIC2.4□□□□□ -2.03
CD44P16070 AC025627.3-201ENST00000582078 182 ntBASIC2.4□□□□□ -2.03
CD44P16070 FO624990.1-201ENST00000636373 85 ntBASIC2.4□□□□□ -2.03
CD44P16070 AP000553.5-201ENST00000641933 54 ntBASIC2.4□□□□□ -2.03
CD44P16070 RNA5SP338-201ENST00000410495 85 ntBASIC2.39□□□□□ -2.03
CD44P16070 RNU1-92P-201ENST00000517017 135 ntBASIC2.39□□□□□ -2.03
CD44P16070 MIR4781-201ENST00000585250 76 ntBASIC2.39□□□□□ -2.03
CD44P16070 RNU6-133P-201ENST00000383989 107 ntBASIC2.38□□□□□ -2.03
CD44P16070 MIR548AA1-201ENST00000384971 97 ntBASIC2.38□□□□□ -2.03
CD44P16070 SNORD110-201ENST00000408189 75 ntBASIC2.38□□□□□ -2.03
CD44P16070 RNA5SP200-201ENST00000516360 103 ntBASIC2.38□□□□□ -2.03
CD44P16070 MIR4672-201ENST00000583126 81 ntBASIC2.38□□□□□ -2.03
CD44P16070 RNA5SP160-201ENST00000364866 120 ntBASIC2.37□□□□□ -2.03
CD44P16070 MIR3678-201ENST00000578455 94 ntBASIC2.37□□□□□ -2.03
CD44P16070 AC245884.12-201ENST00000615364 59 ntBASIC2.37□□□□□ -2.03
CD44P16070 Z82195.2-201ENST00000612348 18351 ntBASIC2.37□□□□□ -2.03
CD44P16070 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
CD44P16070 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CD44P16070 RNA5SP432-201ENST00000362480 116 ntBASIC2.36□□□□□ -2.03
CD44P16070 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.36□□□□□ -2.03
CD44P16070 RNU6-717P-201ENST00000459076 104 ntBASIC2.36□□□□□ -2.03
CD44P16070 MIR6773-201ENST00000612812 74 ntBASIC2.36□□□□□ -2.03
CD44P16070 MIR30A-201ENST00000385092 71 ntBASIC2.35□□□□□ -2.03
CD44P16070 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.35□□□□□ -2.03
CD44P16070 AC244090.1-201ENST00000441884 93 ntBASIC2.35□□□□□ -2.03
CD44P16070 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC2.35□□□□□ -2.03
CD44P16070 SNORA48.3-201ENST00000391081 134 ntBASIC2.34□□□□□ -2.03
CD44P16070 SNORA17.3-201ENST00000391159 129 ntBASIC2.34□□□□□ -2.03
CD44P16070 AC079804.2-201ENST00000490376 200 ntBASIC2.34□□□□□ -2.03
CD44P16070 Y_RNA.206-201ENST00000364136 102 ntBASIC2.33□□□□□ -2.04
CD44P16070 SNORA26.9-201ENST00000391322 122 ntBASIC2.33□□□□□ -2.04
CD44P16070 RNU6-1262P-201ENST00000516217 96 ntBASIC2.33□□□□□ -2.04
CD44P16070 MIR6828-201ENST00000636181 60 ntBASIC2.33□□□□□ -2.04
CD44P16070 MIR20A-201ENST00000362279 71 ntBASIC2.32□□□□□ -2.04
CD44P16070 RNU6-974P-201ENST00000384099 108 ntBASIC2.32□□□□□ -2.04
CD44P16070 RNU6-1267P-201ENST00000410747 107 ntBASIC2.32□□□□□ -2.04
CD44P16070 MIR4446-201ENST00000578505 67 ntBASIC2.32□□□□□ -2.04
CD44P16070 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC2.32□□□□□ -2.04
CD44P16070 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CD44P16070 RNA5SP393-201ENST00000363423 117 ntBASIC2.31□□□□□ -2.04
CD44P16070 RNU6-1326P-201ENST00000391262 107 ntBASIC2.31□□□□□ -2.04
CD44P16070 RNU4-53P-201ENST00000410828 140 ntBASIC2.31□□□□□ -2.04
CD44P16070 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CD44P16070 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
CD44P16070 SNORD2-201ENST00000459163 69 ntBASIC2.3□□□□□ -2.04
CD44P16070 RNU1-40P-201ENST00000516816 164 ntBASIC2.3□□□□□ -2.04
CD44P16070 RNU1-97P-201ENST00000516872 164 ntBASIC2.3□□□□□ -2.04
CD44P16070 MIR4299-201ENST00000577899 72 ntBASIC2.3□□□□□ -2.04
CD44P16070 MIR6132-201ENST00000622083 109 ntBASIC2.3□□□□□ -2.04
CD44P16070 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CD44P16070 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CD44P16070 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CD44P16070 Y_RNA.345-201ENST00000365384 92 ntBASIC2.28□□□□□ -2.04
CD44P16070 MIRLET7B-201ENST00000385140 83 ntBASIC2.28□□□□□ -2.04
CD44P16070 RNA5SP37-201ENST00000365420 130 ntBASIC2.27□□□□□ -2.05
CD44P16070 MIR23A-201ENST00000385245 73 ntBASIC2.27□□□□□ -2.05
CD44P16070 SNORD105-201ENST00000386910 85 ntBASIC2.27□□□□□ -2.05
CD44P16070 RNA5SP227-201ENST00000516184 113 ntBASIC2.27□□□□□ -2.05
CD44P16070 SNORA64-201ENST00000384674 134 ntBASIC2.26□□□□□ -2.05
CD44P16070 SNORD111B-201ENST00000408587 80 ntBASIC2.26□□□□□ -2.05
CD44P16070 RPL23AP94-201ENST00000512518 302 ntBASIC2.26□□□□□ -2.05
CD44P16070 Y_RNA.783-201ENST00000613546 102 ntBASIC2.26□□□□□ -2.05
CD44P16070 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
CD44P16070 RNY1P8-201ENST00000383970 114 ntBASIC2.25□□□□□ -2.05
CD44P16070 RNA5SP82-201ENST00000516707 92 ntBASIC2.25□□□□□ -2.05
CD44P16070 SNORD53-201ENST00000579969 78 ntBASIC2.25□□□□□ -2.05
CD44P16070 RNU6-1110P-201ENST00000516462 101 ntBASIC2.24□□□□□ -2.05
CD44P16070 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
CD44P16070 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CD44P16070 MIR524-201ENST00000385242 87 ntBASIC2.23□□□□□ -2.05
CD44P16070 SNORA49-201ENST00000386157 136 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 193 ms