Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RNU6-857P-201ENST00000515893 110 ntBASIC0.87□□□□□ -2.27
HLA-DOAP06340 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.87□□□□□ -2.27
HLA-DOAP06340 PVT1_3.1-201ENST00000620853 95 ntBASIC0.87□□□□□ -2.27
HLA-DOAP06340 AC067863.3-201ENST00000624172 122 ntBASIC0.87□□□□□ -2.27
HLA-DOAP06340 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
HLA-DOAP06340 RNU6-726P-201ENST00000364680 107 ntBASIC0.86□□□□□ -2.27
HLA-DOAP06340 MIR608-201ENST00000384820 100 ntBASIC0.86□□□□□ -2.27
HLA-DOAP06340 RNU6-1229P-201ENST00000364295 107 ntBASIC0.85□□□□□ -2.27
HLA-DOAP06340 RNU6-1187P-201ENST00000364771 110 ntBASIC0.85□□□□□ -2.27
HLA-DOAP06340 MIR519E-201ENST00000385075 84 ntBASIC0.85□□□□□ -2.27
HLA-DOAP06340 RNA5SP436-201ENST00000516020 115 ntBASIC0.85□□□□□ -2.27
HLA-DOAP06340 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.85□□□□□ -2.27
HLA-DOAP06340 AL590095.2-201ENST00000604136 117 ntBASIC0.85□□□□□ -2.27
HLA-DOAP06340 SNORA36.2-201ENST00000384004 127 ntBASIC0.84□□□□□ -2.27
HLA-DOAP06340 Y_RNA.532-201ENST00000384590 113 ntBASIC0.84□□□□□ -2.27
HLA-DOAP06340 RNU6-279P-201ENST00000391297 101 ntBASIC0.84□□□□□ -2.27
HLA-DOAP06340 Y_RNA.244-201ENST00000364484 109 ntBASIC0.83□□□□□ -2.28
HLA-DOAP06340 SNORA24B-201ENST00000384176 131 ntBASIC0.83□□□□□ -2.28
HLA-DOAP06340 MIR548L-201ENST00000408303 86 ntBASIC0.83□□□□□ -2.28
HLA-DOAP06340 RNU6-638P-201ENST00000516582 104 ntBASIC0.83□□□□□ -2.28
HLA-DOAP06340 RNA5SP94-201ENST00000516917 108 ntBASIC0.83□□□□□ -2.28
HLA-DOAP06340 MIRLET7A1-201ENST00000362295 80 ntBASIC0.82□□□□□ -2.28
HLA-DOAP06340 RNU6-208P-201ENST00000362431 107 ntBASIC0.82□□□□□ -2.28
HLA-DOAP06340 SNORD115-44-201ENST00000365391 82 ntBASIC0.82□□□□□ -2.28
HLA-DOAP06340 Y_RNA.540-201ENST00000384638 111 ntBASIC0.82□□□□□ -2.28
HLA-DOAP06340 MIR889-201ENST00000401280 79 ntBASIC0.82□□□□□ -2.28
HLA-DOAP06340 SCARNA16.5-201ENST00000517114 183 ntBASIC0.82□□□□□ -2.28
HLA-DOAP06340 Y_RNA.788-201ENST00000622394 112 ntBASIC0.82□□□□□ -2.28
HLA-DOAP06340 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
HLA-DOAP06340 Y_RNA.258-201ENST00000364613 105 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 MIR617-201ENST00000385030 97 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 SNORD41.1-201ENST00000391000 69 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 SNORD77.2-201ENST00000391045 68 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 RNU6-269P-201ENST00000391077 97 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 PSMC1P5-201ENST00000512850 177 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 RNU6-135P-201ENST00000516769 101 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 RNU6-1057P-201ENST00000517162 102 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 MIR4484-201ENST00000582855 83 ntBASIC0.81□□□□□ -2.28
HLA-DOAP06340 RNU6-686P-201ENST00000364839 107 ntBASIC0.8□□□□□ -2.28
HLA-DOAP06340 Y_RNA.371-201ENST00000365591 113 ntBASIC0.8□□□□□ -2.28
HLA-DOAP06340 RNU6-557P-201ENST00000516842 110 ntBASIC0.8□□□□□ -2.28
HLA-DOAP06340 MIR7107-201ENST00000611489 80 ntBASIC0.8□□□□□ -2.28
HLA-DOAP06340 MIR6828-201ENST00000636181 60 ntBASIC0.8□□□□□ -2.28
HLA-DOAP06340 RNU6-824P-201ENST00000363724 104 ntBASIC0.79□□□□□ -2.28
HLA-DOAP06340 RPL39P28-201ENST00000465655 155 ntBASIC0.79□□□□□ -2.28
HLA-DOAP06340 RNA5SP227-201ENST00000516184 113 ntBASIC0.79□□□□□ -2.28
HLA-DOAP06340 RNA5SP268-201ENST00000516828 124 ntBASIC0.79□□□□□ -2.28
HLA-DOAP06340 MIR4752-201ENST00000579672 72 ntBASIC0.79□□□□□ -2.28
HLA-DOAP06340 Y_RNA.12-201ENST00000362393 112 ntBASIC0.78□□□□□ -2.28
HLA-DOAP06340 RNU5F-1-201ENST00000362507 117 ntBASIC0.78□□□□□ -2.28
HLA-DOAP06340 RNU6-315P-201ENST00000362666 107 ntBASIC0.78□□□□□ -2.28
HLA-DOAP06340 RNA5SP517-201ENST00000364724 117 ntBASIC0.78□□□□□ -2.28
HLA-DOAP06340 RNU6-24P-201ENST00000384440 107 ntBASIC0.78□□□□□ -2.28
HLA-DOAP06340 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
HLA-DOAP06340 SCARNA18B-201ENST00000458806 135 ntBASIC0.78□□□□□ -2.28
HLA-DOAP06340 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.78□□□□□ -2.28
HLA-DOAP06340 MIR6513-201ENST00000621188 64 ntBASIC0.78□□□□□ -2.28
HLA-DOAP06340 RNA5SP484-201ENST00000458857 111 ntBASIC0.77□□□□□ -2.29
HLA-DOAP06340 RNA5SP480-201ENST00000516840 109 ntBASIC0.77□□□□□ -2.29
HLA-DOAP06340 SNORA25.18-201ENST00000607153 114 ntBASIC0.77□□□□□ -2.29
HLA-DOAP06340 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.77□□□□□ -2.29
HLA-DOAP06340 RNU6-330P-201ENST00000363015 107 ntBASIC0.76□□□□□ -2.29
HLA-DOAP06340 RNU6-54P-201ENST00000365563 107 ntBASIC0.76□□□□□ -2.29
HLA-DOAP06340 AC093423.1-201ENST00000440817 142 ntBASIC0.76□□□□□ -2.29
HLA-DOAP06340 MIR664A-201ENST00000626086 82 ntBASIC0.76□□□□□ -2.29
HLA-DOAP06340 RNY4P3-201ENST00000365254 95 ntBASIC0.75□□□□□ -2.29
HLA-DOAP06340 RNU6V-201ENST00000384105 107 ntBASIC0.75□□□□□ -2.29
HLA-DOAP06340 SNORA8.2-201ENST00000384372 139 ntBASIC0.75□□□□□ -2.29
HLA-DOAP06340 MIR140-201ENST00000385282 100 ntBASIC0.75□□□□□ -2.29
HLA-DOAP06340 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.75□□□□□ -2.29
HLA-DOAP06340 RNU4-54P-201ENST00000516428 129 ntBASIC0.75□□□□□ -2.29
HLA-DOAP06340 AL162376.1-201ENST00000624117 175 ntBASIC0.75□□□□□ -2.29
HLA-DOAP06340 RNU1-141P-201ENST00000364623 158 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 RNU6-382P-201ENST00000365181 106 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 MIR146A-201ENST00000385201 99 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 RNU6-1177P-201ENST00000391058 104 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 AC069271.1-201ENST00000445577 156 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 RNU5B-6P-201ENST00000516765 68 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 NAMPTP3-201ENST00000569273 224 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 MIR4773-1-201ENST00000637203 78 ntBASIC0.74□□□□□ -2.29
HLA-DOAP06340 RNA5SP347-201ENST00000362445 119 ntBASIC0.73□□□□□ -2.29
HLA-DOAP06340 RNU6-340P-201ENST00000364005 107 ntBASIC0.73□□□□□ -2.29
HLA-DOAP06340 MIR548O2-201ENST00000616090 70 ntBASIC0.73□□□□□ -2.29
HLA-DOAP06340 RNU6-1094P-201ENST00000362416 104 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 MIR216A-201ENST00000385063 110 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 U3.27-201ENST00000391237 200 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 SNORD42B-201ENST00000458893 67 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 AC097510.1-201ENST00000510945 133 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 Y_RNA.660-201ENST00000516002 120 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 YWHAEP2-201ENST00000580066 112 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 YWHAEP3-201ENST00000582767 121 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 SNORA70.25-201ENST00000612741 95 ntBASIC0.72□□□□□ -2.29
HLA-DOAP06340 Y_RNA.36-201ENST00000362602 112 ntBASIC0.71□□□□□ -2.3
HLA-DOAP06340 SNORD114-26-201ENST00000363543 72 ntBASIC0.71□□□□□ -2.3
HLA-DOAP06340 Y_RNA.264-201ENST00000364665 102 ntBASIC0.71□□□□□ -2.3
HLA-DOAP06340 RNU4-45P-201ENST00000365469 141 ntBASIC0.71□□□□□ -2.3
HLA-DOAP06340 AC018659.1-201ENST00000551083 169 ntBASIC0.71□□□□□ -2.3
HLA-DOAP06340 MIR4460-201ENST00000577862 86 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms