Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
USP3Q9Y6I4 RNA5SP117-201ENST00000365294 118 ntBASIC1.66□□□□□ -2.14
USP3Q9Y6I4 SNORA25-201ENST00000384384 134 ntBASIC1.66□□□□□ -2.14
USP3Q9Y6I4 MIR3122-201ENST00000577243 73 ntBASIC1.66□□□□□ -2.14
USP3Q9Y6I4 MIR664A-201ENST00000626086 82 ntBASIC1.66□□□□□ -2.14
USP3Q9Y6I4 MIR617-201ENST00000385030 97 ntBASIC1.65□□□□□ -2.15
USP3Q9Y6I4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
USP3Q9Y6I4 SNORD30.1-201ENST00000391309 70 ntBASIC1.65□□□□□ -2.15
USP3Q9Y6I4 RNU6-1052P-201ENST00000411398 104 ntBASIC1.65□□□□□ -2.15
USP3Q9Y6I4 RNU6-719P-201ENST00000516671 104 ntBASIC1.65□□□□□ -2.15
USP3Q9Y6I4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.65□□□□□ -2.15
USP3Q9Y6I4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
USP3Q9Y6I4 RNU6-330P-201ENST00000363015 107 ntBASIC1.64□□□□□ -2.15
USP3Q9Y6I4 RNU6-469P-201ENST00000516253 101 ntBASIC1.64□□□□□ -2.15
USP3Q9Y6I4 RNU7-161P-201ENST00000517289 62 ntBASIC1.64□□□□□ -2.15
USP3Q9Y6I4 MIR4303-201ENST00000581299 66 ntBASIC1.64□□□□□ -2.15
USP3Q9Y6I4 MIR3920-201ENST00000581751 86 ntBASIC1.64□□□□□ -2.15
USP3Q9Y6I4 AC067863.3-201ENST00000624172 122 ntBASIC1.64□□□□□ -2.15
USP3Q9Y6I4 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
USP3Q9Y6I4 RNU6-540P-201ENST00000384622 101 ntBASIC1.63□□□□□ -2.15
USP3Q9Y6I4 RNU7-24P-201ENST00000458867 62 ntBASIC1.63□□□□□ -2.15
USP3Q9Y6I4 U7.7-201ENST00000459276 60 ntBASIC1.63□□□□□ -2.15
USP3Q9Y6I4 AC002350.1-201ENST00000490759 375 ntBASIC1.63□□□□□ -2.15
USP3Q9Y6I4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.63□□□□□ -2.15
USP3Q9Y6I4 MIR4639-201ENST00000584938 69 ntBASIC1.63□□□□□ -2.15
USP3Q9Y6I4 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
USP3Q9Y6I4 AC108667.1-201ENST00000428618 249 ntBASIC1.62□□□□□ -2.15
USP3Q9Y6I4 RNU7-104P-201ENST00000459398 79 ntBASIC1.62□□□□□ -2.15
USP3Q9Y6I4 BX248123.2-201ENST00000606318 124 ntBASIC1.62□□□□□ -2.15
USP3Q9Y6I4 U6.111-201ENST00000636093 83 ntBASIC1.62□□□□□ -2.15
USP3Q9Y6I4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
USP3Q9Y6I4 MIR200A-201ENST00000384875 90 ntBASIC1.61□□□□□ -2.15
USP3Q9Y6I4 MIR517C-201ENST00000385103 95 ntBASIC1.61□□□□□ -2.15
USP3Q9Y6I4 RNU6-663P-201ENST00000391105 106 ntBASIC1.61□□□□□ -2.15
USP3Q9Y6I4 SNORD75.2-201ENST00000408784 58 ntBASIC1.61□□□□□ -2.15
USP3Q9Y6I4 AL603825.1-201ENST00000438481 80 ntBASIC1.61□□□□□ -2.15
USP3Q9Y6I4 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.61□□□□□ -2.15
USP3Q9Y6I4 MIR4773-1-201ENST00000637203 78 ntBASIC1.61□□□□□ -2.15
USP3Q9Y6I4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
USP3Q9Y6I4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
USP3Q9Y6I4 RNU6-895P-201ENST00000384125 103 ntBASIC1.6□□□□□ -2.15
USP3Q9Y6I4 MIR19B1-201ENST00000384829 87 ntBASIC1.6□□□□□ -2.15
USP3Q9Y6I4 SNORD105-201ENST00000386910 85 ntBASIC1.6□□□□□ -2.15
USP3Q9Y6I4 MIR1323-201ENST00000408090 73 ntBASIC1.6□□□□□ -2.15
USP3Q9Y6I4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.6□□□□□ -2.15
USP3Q9Y6I4 SNORD53B-201ENST00000577887 78 ntBASIC1.6□□□□□ -2.15
USP3Q9Y6I4 AL078603.1-201ENST00000603824 313 ntBASIC1.6□□□□□ -2.15
USP3Q9Y6I4 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.6□□□□□ -2.15
USP3Q9Y6I4 RNU1-42P-201ENST00000364033 160 ntBASIC1.59□□□□□ -2.15
USP3Q9Y6I4 MIR320A-201ENST00000385302 82 ntBASIC1.59□□□□□ -2.15
USP3Q9Y6I4 RNU4-62P-201ENST00000410125 130 ntBASIC1.59□□□□□ -2.15
USP3Q9Y6I4 RNU6-382P-201ENST00000365181 106 ntBASIC1.58□□□□□ -2.16
USP3Q9Y6I4 Y_RNA.340-201ENST00000365330 92 ntBASIC1.58□□□□□ -2.16
USP3Q9Y6I4 RNU6-800P-201ENST00000384473 103 ntBASIC1.58□□□□□ -2.16
USP3Q9Y6I4 RNA5SP458-201ENST00000516188 119 ntBASIC1.58□□□□□ -2.16
USP3Q9Y6I4 MIR548AG2-201ENST00000581228 64 ntBASIC1.58□□□□□ -2.16
USP3Q9Y6I4 SNORD115-31-201ENST00000365318 82 ntBASIC1.57□□□□□ -2.16
USP3Q9Y6I4 SNORA67.6-201ENST00000391093 99 ntBASIC1.57□□□□□ -2.16
USP3Q9Y6I4 AC244098.3-201ENST00000424803 96 ntBASIC1.57□□□□□ -2.16
USP3Q9Y6I4 RNU1-123P-201ENST00000458950 160 ntBASIC1.57□□□□□ -2.16
USP3Q9Y6I4 MIR548O2-201ENST00000616090 70 ntBASIC1.57□□□□□ -2.16
USP3Q9Y6I4 SNORD45.1-201ENST00000363181 77 ntBASIC1.56□□□□□ -2.16
USP3Q9Y6I4 SNORD41.1-201ENST00000391000 69 ntBASIC1.56□□□□□ -2.16
USP3Q9Y6I4 Y_RNA.676-201ENST00000516393 96 ntBASIC1.56□□□□□ -2.16
USP3Q9Y6I4 SNORA31.24-201ENST00000517232 57 ntBASIC1.56□□□□□ -2.16
USP3Q9Y6I4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.56□□□□□ -2.16
USP3Q9Y6I4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
USP3Q9Y6I4 RNA5SP327-201ENST00000362494 101 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 RNU6-495P-201ENST00000362995 107 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 SNORA7.1-201ENST00000363750 139 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 SNORD28-201ENST00000384706 75 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 MIR519E-201ENST00000385075 84 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 SNORD89-201ENST00000390981 114 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 MIR1304-201ENST00000408243 91 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 RNU6-881P-201ENST00000516813 102 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 AC025627.3-201ENST00000582078 182 ntBASIC1.55□□□□□ -2.16
USP3Q9Y6I4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.55□□□□□ -2.16
USP3Q9Y6I4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.54□□□□□ -2.16
USP3Q9Y6I4 Y_RNA.258-201ENST00000364613 105 ntBASIC1.54□□□□□ -2.16
USP3Q9Y6I4 Y_RNA.386-201ENST00000383913 105 ntBASIC1.54□□□□□ -2.16
USP3Q9Y6I4 AP1B1P2-201ENST00000416196 106 ntBASIC1.54□□□□□ -2.16
USP3Q9Y6I4 AL691482.2-201ENST00000457453 84 ntBASIC1.54□□□□□ -2.16
USP3Q9Y6I4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.54□□□□□ -2.16
USP3Q9Y6I4 RNU6-471P-201ENST00000383944 106 ntBASIC1.53□□□□□ -2.16
USP3Q9Y6I4 AL354695.1-201ENST00000427935 228 ntBASIC1.53□□□□□ -2.16
USP3Q9Y6I4 RNU7-95P-201ENST00000459222 64 ntBASIC1.53□□□□□ -2.16
USP3Q9Y6I4 AC244669.1-204ENST00000621564 178 ntBASIC1.53□□□□□ -2.16
USP3Q9Y6I4 SNORD115-22-201ENST00000364456 82 ntBASIC1.52□□□□□ -2.17
USP3Q9Y6I4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
USP3Q9Y6I4 SNORA25.4-201ENST00000363666 124 ntBASIC1.51□□□□□ -2.17
USP3Q9Y6I4 RNU6-997P-201ENST00000384725 107 ntBASIC1.51□□□□□ -2.17
USP3Q9Y6I4 MIR573-201ENST00000384964 99 ntBASIC1.51□□□□□ -2.17
USP3Q9Y6I4 MIR644A-201ENST00000385262 94 ntBASIC1.51□□□□□ -2.17
USP3Q9Y6I4 MIR548L-201ENST00000408303 86 ntBASIC1.51□□□□□ -2.17
USP3Q9Y6I4 MIR1265-201ENST00000408444 86 ntBASIC1.51□□□□□ -2.17
USP3Q9Y6I4 AC093423.1-201ENST00000440817 142 ntBASIC1.51□□□□□ -2.17
USP3Q9Y6I4 MIR378A-201ENST00000362177 66 ntBASIC1.5□□□□□ -2.17
USP3Q9Y6I4 RNU6-1216P-201ENST00000362590 107 ntBASIC1.5□□□□□ -2.17
USP3Q9Y6I4 SNORD26-201ENST00000384147 75 ntBASIC1.5□□□□□ -2.17
USP3Q9Y6I4 RNA5SP47-201ENST00000517230 109 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 176.2 ms