Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MIR6514-201ENST00000622549 70 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 MIR4460-201ENST00000577862 86 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 AC096720.1-201ENST00000604441 183 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 SNORA32.1-201ENST00000364514 115 ntBASIC-0.23□□□□□ -2.45
CPSF3Q9UKF6 snoU13.11-201ENST00000459219 104 ntBASIC-0.23□□□□□ -2.45
CPSF3Q9UKF6 RNU6-832P-201ENST00000363319 107 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 MIR181B2-201ENST00000385004 89 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-466P-201ENST00000391224 103 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-659P-201ENST00000516454 104 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 AC068339.1-201ENST00000526965 141 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 CR383656.4-201ENST00000546909 122 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 RNU6-480P-201ENST00000384332 107 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR329-2-201ENST00000385029 84 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MT-TY-201ENST00000387409 66 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR3613-201ENST00000579844 87 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR3133-201ENST00000583157 78 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR548AE1-201ENST00000583292 70 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 RNY3P2-201ENST00000362918 102 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 RNA5SP257-201ENST00000363023 116 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 MIR106A-201ENST00000384870 81 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 MIR548A1-201ENST00000385041 97 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 AC109327.2-201ENST00000448339 378 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 U8.6-201ENST00000364939 135 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 SNORD101-201ENST00000384027 73 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 RNU7-188P-201ENST00000517063 64 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 MIR4696-201ENST00000581431 70 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 RN7SL660P-201ENST00000614852 299 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 AC025521.1-201ENST00000621624 286 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 U6.95-201ENST00000636931 70 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 MIR148A-201ENST00000362215 68 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 SNORD50.2-201ENST00000365465 70 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 uc_338.10-201ENST00000621872 182 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 RNU6-664P-201ENST00000362381 107 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 RNU6-774P-201ENST00000363238 107 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 MIR548A3-201ENST00000385297 97 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 MIR5009-201ENST00000578736 100 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 RNU6-86P-201ENST00000606534 107 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 MT-TR-201ENST00000387439 65 ntBASIC-0.3□□□□□ -2.46
CPSF3Q9UKF6 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.3□□□□□ -2.46
CPSF3Q9UKF6 RNU6-46P-201ENST00000383860 107 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-14-201ENST00000383894 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-17-201ENST00000383929 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-15-201ENST00000384445 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-19-201ENST00000384729 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 RNU6-75P-201ENST00000515944 104 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 RNA5SP285-201ENST00000516619 119 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 RNU6-704P-201ENST00000364162 103 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 RNU6-154P-201ENST00000384306 106 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 AL670379.3-201ENST00000605040 251 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 SNORA18.1-201ENST00000363418 128 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 RNU6-746P-201ENST00000384112 109 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 RNU6-935P-201ENST00000410371 100 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 SNORD4A-201ENST00000459174 72 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 AL513043.2-201ENST00000573941 143 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 MIR214-201ENST00000385214 110 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 RNU6-175P-201ENST00000516896 107 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 IGLVI-20-201ENST00000519296 130 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 MIR4439-201ENST00000583746 80 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 SNORD45B-201ENST00000364617 72 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 SNORD114-29-201ENST00000364819 70 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 SNORD114-12-201ENST00000365400 75 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 MIR6507-201ENST00000613630 70 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 MIR548O2-201ENST00000616090 70 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 RNU7-85P-201ENST00000458851 63 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 SNORD49B-201ENST00000365172 72 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 RNU6-880P-201ENST00000384526 107 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 MIR451A-201ENST00000385059 72 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 MIR216B-201ENST00000390186 82 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 AC244250.2-201ENST00000418731 148 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 SNORD114-31-201ENST00000363219 75 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 RNU6-813P-201ENST00000384691 107 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 MIR652-201ENST00000385278 98 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 RNU6-65P-201ENST00000516332 98 ntBASIC-0.38□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 176.9 ms