Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MIR6514-201ENST00000622549 70 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 MIR4460-201ENST00000577862 86 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 AC096720.1-201ENST00000604441 183 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.22□□□□□ -2.44
CPSF3Q9UKF6 SNORA32.1-201ENST00000364514 115 ntBASIC-0.23□□□□□ -2.45
CPSF3Q9UKF6 snoU13.11-201ENST00000459219 104 ntBASIC-0.23□□□□□ -2.45
CPSF3Q9UKF6 RNU6-832P-201ENST00000363319 107 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 MIR181B2-201ENST00000385004 89 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-466P-201ENST00000391224 103 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-659P-201ENST00000516454 104 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 AC068339.1-201ENST00000526965 141 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 CR383656.4-201ENST00000546909 122 ntBASIC-0.24□□□□□ -2.45
CPSF3Q9UKF6 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 RNU6-480P-201ENST00000384332 107 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR329-2-201ENST00000385029 84 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MT-TY-201ENST00000387409 66 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR3613-201ENST00000579844 87 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR3133-201ENST00000583157 78 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 MIR548AE1-201ENST00000583292 70 ntBASIC-0.25□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 RNY3P2-201ENST00000362918 102 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 RNA5SP257-201ENST00000363023 116 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 MIR106A-201ENST00000384870 81 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 MIR548A1-201ENST00000385041 97 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 AC109327.2-201ENST00000448339 378 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.26□□□□□ -2.45
CPSF3Q9UKF6 U8.6-201ENST00000364939 135 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 SNORD101-201ENST00000384027 73 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 RNU7-188P-201ENST00000517063 64 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 MIR4696-201ENST00000581431 70 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 RN7SL660P-201ENST00000614852 299 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 AC025521.1-201ENST00000621624 286 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 U6.95-201ENST00000636931 70 ntBASIC-0.27□□□□□ -2.45
CPSF3Q9UKF6 MIR148A-201ENST00000362215 68 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 SNORD50.2-201ENST00000365465 70 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 uc_338.10-201ENST00000621872 182 ntBASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.28□□□□□ -2.45
CPSF3Q9UKF6 RNU6-664P-201ENST00000362381 107 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 RNU6-774P-201ENST00000363238 107 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 MIR548A3-201ENST00000385297 97 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 MIR5009-201ENST00000578736 100 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 RNU6-86P-201ENST00000606534 107 ntBASIC-0.29□□□□□ -2.46
CPSF3Q9UKF6 MT-TR-201ENST00000387439 65 ntBASIC-0.3□□□□□ -2.46
CPSF3Q9UKF6 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.3□□□□□ -2.46
CPSF3Q9UKF6 RNU6-46P-201ENST00000383860 107 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-14-201ENST00000383894 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-17-201ENST00000383929 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-15-201ENST00000384445 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 SNORD116-19-201ENST00000384729 92 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 RNU6-75P-201ENST00000515944 104 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 RNA5SP285-201ENST00000516619 119 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.31□□□□□ -2.46
CPSF3Q9UKF6 RNU6-704P-201ENST00000364162 103 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 RNU6-154P-201ENST00000384306 106 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 AL670379.3-201ENST00000605040 251 ntBASIC-0.32□□□□□ -2.46
CPSF3Q9UKF6 SNORA18.1-201ENST00000363418 128 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 RNU6-746P-201ENST00000384112 109 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 RNU6-935P-201ENST00000410371 100 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 SNORD4A-201ENST00000459174 72 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 AL513043.2-201ENST00000573941 143 ntBASIC-0.33□□□□□ -2.46
CPSF3Q9UKF6 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 MIR214-201ENST00000385214 110 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 RNU6-175P-201ENST00000516896 107 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 IGLVI-20-201ENST00000519296 130 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 MIR4439-201ENST00000583746 80 ntBASIC-0.34□□□□□ -2.46
CPSF3Q9UKF6 SNORD45B-201ENST00000364617 72 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 SNORD114-29-201ENST00000364819 70 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 SNORD114-12-201ENST00000365400 75 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 MIR6507-201ENST00000613630 70 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 MIR548O2-201ENST00000616090 70 ntBASIC-0.35□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 RNU7-85P-201ENST00000458851 63 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.36□□□□□ -2.47
CPSF3Q9UKF6 SNORD49B-201ENST00000365172 72 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 RNU6-880P-201ENST00000384526 107 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 MIR451A-201ENST00000385059 72 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 MIR216B-201ENST00000390186 82 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 AC244250.2-201ENST00000418731 148 ntBASIC-0.37□□□□□ -2.47
CPSF3Q9UKF6 SNORD114-31-201ENST00000363219 75 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 RNU6-813P-201ENST00000384691 107 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 MIR652-201ENST00000385278 98 ntBASIC-0.38□□□□□ -2.47
CPSF3Q9UKF6 RNU6-65P-201ENST00000516332 98 ntBASIC-0.38□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 181.2 ms