Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RN7SL660P-201ENST00000614852 299 ntBASIC-0.48□□□□□ -2.49
VPS28Q9UK41 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 RNU6-480P-201ENST00000384332 107 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 RNU6-772P-201ENST00000516042 105 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 MIR4645-201ENST00000583158 77 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 AL670379.3-201ENST00000605040 251 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 MIR3666-201ENST00000607845 111 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 AC090425.1-201ENST00000610007 140 ntBASIC-0.49□□□□□ -2.49
VPS28Q9UK41 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.5□□□□□ -2.49
VPS28Q9UK41 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.5□□□□□ -2.49
VPS28Q9UK41 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.5□□□□□ -2.49
VPS28Q9UK41 MIR5589-201ENST00000579442 60 ntBASIC-0.5□□□□□ -2.49
VPS28Q9UK41 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.51□□□□□ -2.49
VPS28Q9UK41 SNORD101-201ENST00000384027 73 ntBASIC-0.51□□□□□ -2.49
VPS28Q9UK41 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.51□□□□□ -2.49
VPS28Q9UK41 MIR216B-201ENST00000390186 82 ntBASIC-0.51□□□□□ -2.49
VPS28Q9UK41 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.51□□□□□ -2.49
VPS28Q9UK41 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.51□□□□□ -2.49
VPS28Q9UK41 AL157777.2-201ENST00000258070 137 ntBASIC-0.52□□□□□ -2.49
VPS28Q9UK41 SNORD114-28-201ENST00000363610 72 ntBASIC-0.52□□□□□ -2.49
VPS28Q9UK41 U8.6-201ENST00000364939 135 ntBASIC-0.52□□□□□ -2.49
VPS28Q9UK41 RNU6-154P-201ENST00000384306 106 ntBASIC-0.52□□□□□ -2.49
VPS28Q9UK41 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.52□□□□□ -2.49
VPS28Q9UK41 MIR4802-201ENST00000581881 80 ntBASIC-0.52□□□□□ -2.49
VPS28Q9UK41 MIR548AE1-201ENST00000583292 70 ntBASIC-0.52□□□□□ -2.49
VPS28Q9UK41 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.52□□□□□ -2.49
VPS28Q9UK41 MIR539-201ENST00000365690 78 ntBASIC-0.53□□□□□ -2.49
VPS28Q9UK41 AC007012.1-201ENST00000567192 175 ntBASIC-0.53□□□□□ -2.49
VPS28Q9UK41 MIR4263-201ENST00000584745 83 ntBASIC-0.53□□□□□ -2.49
VPS28Q9UK41 RNA5SP98-201ENST00000363158 137 ntBASIC-0.54□□□□□ -2.5
VPS28Q9UK41 RNU6-257P-201ENST00000410238 98 ntBASIC-0.54□□□□□ -2.5
VPS28Q9UK41 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.54□□□□□ -2.5
VPS28Q9UK41 RNU6-794P-201ENST00000517261 64 ntBASIC-0.54□□□□□ -2.5
VPS28Q9UK41 MIR4679-2-201ENST00000578358 77 ntBASIC-0.54□□□□□ -2.5
VPS28Q9UK41 MIR4694-201ENST00000578534 80 ntBASIC-0.54□□□□□ -2.5
VPS28Q9UK41 RNU6-664P-201ENST00000362381 107 ntBASIC-0.55□□□□□ -2.5
VPS28Q9UK41 AP001180.6-201ENST00000584918 159 ntBASIC-0.55□□□□□ -2.5
VPS28Q9UK41 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.56□□□□□ -2.5
VPS28Q9UK41 MIR577-201ENST00000385196 96 ntBASIC-0.56□□□□□ -2.5
VPS28Q9UK41 AC244250.2-201ENST00000418731 148 ntBASIC-0.56□□□□□ -2.5
VPS28Q9UK41 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.56□□□□□ -2.5
VPS28Q9UK41 snoU13.11-201ENST00000459219 104 ntBASIC-0.56□□□□□ -2.5
VPS28Q9UK41 MIR4696-201ENST00000581431 70 ntBASIC-0.56□□□□□ -2.5
VPS28Q9UK41 MIR6507-201ENST00000613630 70 ntBASIC-0.56□□□□□ -2.5
VPS28Q9UK41 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.57□□□□□ -2.5
VPS28Q9UK41 RNY1P5-201ENST00000383890 115 ntBASIC-0.57□□□□□ -2.5
VPS28Q9UK41 RNU6-811P-201ENST00000384069 107 ntBASIC-0.57□□□□□ -2.5
VPS28Q9UK41 RNA5SP300-201ENST00000391197 107 ntBASIC-0.57□□□□□ -2.5
VPS28Q9UK41 MIR4636-201ENST00000582271 80 ntBASIC-0.57□□□□□ -2.5
VPS28Q9UK41 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.58□□□□□ -2.5
VPS28Q9UK41 RNU6-935P-201ENST00000410371 100 ntBASIC-0.58□□□□□ -2.5
VPS28Q9UK41 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.58□□□□□ -2.5
VPS28Q9UK41 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.58□□□□□ -2.5
VPS28Q9UK41 MIR548AZ-201ENST00000616567 95 ntBASIC-0.58□□□□□ -2.5
VPS28Q9UK41 AL035470.1-201ENST00000622571 220 ntBASIC-0.58□□□□□ -2.5
VPS28Q9UK41 MIR20A-201ENST00000362279 71 ntBASIC-0.6□□□□□ -2.51
VPS28Q9UK41 RNU6-832P-201ENST00000363319 107 ntBASIC-0.6□□□□□ -2.51
VPS28Q9UK41 SNORA32.3-201ENST00000384772 121 ntBASIC-0.6□□□□□ -2.51
VPS28Q9UK41 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.6□□□□□ -2.51
VPS28Q9UK41 RNU6-175P-201ENST00000516896 107 ntBASIC-0.6□□□□□ -2.51
VPS28Q9UK41 RNY3P2-201ENST00000362918 102 ntBASIC-0.61□□□□□ -2.51
VPS28Q9UK41 SNORD14C-201ENST00000365382 88 ntBASIC-0.61□□□□□ -2.51
VPS28Q9UK41 SNORD126-201ENST00000459475 77 ntBASIC-0.61□□□□□ -2.51
VPS28Q9UK41 MIR548O2-201ENST00000616090 70 ntBASIC-0.61□□□□□ -2.51
VPS28Q9UK41 RNA5SP205-201ENST00000364653 136 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 RNU6-35P-201ENST00000384530 107 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 MIR196A2-201ENST00000385189 110 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 RNU7-107P-201ENST00000459121 61 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 RNU6-346P-201ENST00000516288 111 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 RNU6-255P-201ENST00000516957 105 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 AC068339.1-201ENST00000526965 141 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 MIR4493-201ENST00000584016 73 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 uc_338.36-201ENST00000622331 158 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 MIR4788-201ENST00000639104 80 ntBASIC-0.62□□□□□ -2.51
VPS28Q9UK41 MIR655-201ENST00000362159 97 ntBASIC-0.63□□□□□ -2.51
VPS28Q9UK41 MIR101-1-201ENST00000362265 75 ntBASIC-0.63□□□□□ -2.51
VPS28Q9UK41 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.63□□□□□ -2.51
VPS28Q9UK41 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.63□□□□□ -2.51
VPS28Q9UK41 AC244090.1-201ENST00000441884 93 ntBASIC-0.63□□□□□ -2.51
VPS28Q9UK41 RNU6-971P-201ENST00000516920 106 ntBASIC-0.63□□□□□ -2.51
VPS28Q9UK41 AC025521.1-201ENST00000621624 286 ntBASIC-0.63□□□□□ -2.51
VPS28Q9UK41 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.64□□□□□ -2.51
VPS28Q9UK41 MIR4439-201ENST00000583746 80 ntBASIC-0.64□□□□□ -2.51
VPS28Q9UK41 RNU6-86P-201ENST00000606534 107 ntBASIC-0.64□□□□□ -2.51
VPS28Q9UK41 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.64□□□□□ -2.51
VPS28Q9UK41 MIR3914-2-201ENST00000637339 95 ntBASIC-0.64□□□□□ -2.51
VPS28Q9UK41 RNU6-80P-201ENST00000384195 107 ntBASIC-0.65□□□□□ -2.51
VPS28Q9UK41 MIR652-201ENST00000385278 98 ntBASIC-0.65□□□□□ -2.51
VPS28Q9UK41 RNU6-65P-201ENST00000516332 98 ntBASIC-0.65□□□□□ -2.51
VPS28Q9UK41 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.65□□□□□ -2.51
VPS28Q9UK41 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.65□□□□□ -2.51
VPS28Q9UK41 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.66□□□□□ -2.52
VPS28Q9UK41 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.66□□□□□ -2.52
VPS28Q9UK41 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.66□□□□□ -2.52
VPS28Q9UK41 MIR451A-201ENST00000385059 72 ntBASIC-0.66□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms