Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 Y_RNA.283-201ENST00000364798 112 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RNU6-215P-201ENST00000365169 102 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 SNORD115-44-201ENST00000365391 82 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 SNORA2A-201ENST00000383885 135 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 Y_RNA.648-201ENST00000459455 110 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 AC108740.1-201ENST00000498629 225 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RNU6-287P-201ENST00000516230 98 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RNU6-1232P-201ENST00000516299 86 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RN7SL793P-201ENST00000583259 296 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 SNORD114-23-201ENST00000363536 72 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 RNA5SP193-201ENST00000410353 107 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 Y_RNA.596-201ENST00000410462 109 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 RNU6-766P-201ENST00000362478 107 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 VTRNA1-3-201ENST00000365645 89 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 MIR760-201ENST00000390220 80 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 RNU6-644P-201ENST00000391155 98 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 AL031737.1-201ENST00000450125 223 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 RNU7-74P-201ENST00000459104 62 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 MIR450A1-201ENST00000362262 91 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 RNU6-509P-201ENST00000363519 107 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR617-201ENST00000385030 97 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 RNA5SP484-201ENST00000458857 111 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR2113-201ENST00000459007 91 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 RNU6-919P-201ENST00000516731 104 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 Y_RNA.705-201ENST00000516862 110 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR4315-1-201ENST00000636800 73 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR4315-2-201ENST00000640925 73 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 SNORA9.1-201ENST00000362412 131 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 Y_RNA.36-201ENST00000362602 112 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 SNORA63.4-201ENST00000362763 126 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 MIR519E-201ENST00000385075 84 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 AC069113.3-201ENST00000521019 150 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 NAMPTP3-201ENST00000569273 224 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 MTRNR2L2-201ENST00000604882 87 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 Y_RNA.818-201ENST00000618813 71 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 AC073869.9-201ENST00000641610 120 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 Y_RNA.107-201ENST00000363190 121 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 Y_RNA.207-201ENST00000364142 106 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 SNORD101-201ENST00000384027 73 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNY1P4-201ENST00000384595 115 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU6-972P-201ENST00000391208 107 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU7-85P-201ENST00000458851 63 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU7-61P-201ENST00000515897 61 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU7-129P-201ENST00000516128 62 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 MIR4696-201ENST00000581431 70 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 MIR4536-1-201ENST00000583537 88 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU6-664P-201ENST00000362381 107 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 Y_RNA.93-201ENST00000363066 109 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 SNORD58A-201ENST00000383875 65 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 AL035461.1-201ENST00000421490 332 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 RNU6-75P-201ENST00000515944 104 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 SNORD114-26-201ENST00000363543 72 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU6-755P-201ENST00000364400 103 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU1-141P-201ENST00000364623 158 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 Y_RNA.466-201ENST00000384294 113 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 Y_RNA.540-201ENST00000384638 111 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 SNORD110-201ENST00000408189 75 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU6-887P-201ENST00000410660 100 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU6-65P-201ENST00000516332 98 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNA5SP480-201ENST00000516840 109 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 MIR5706-201ENST00000579841 80 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 MIR499B-201ENST00000636498 73 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
DDX56Q9NY93 Y_RNA.96-201ENST00000363092 109 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 RNA5SP128-201ENST00000365305 116 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 AC006210.1-201ENST00000424882 111 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 U7.6-201ENST00000610841 64 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 RNU6-44P-201ENST00000384045 107 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 Y_RNA.544-201ENST00000384650 113 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 MIR193B-201ENST00000384907 83 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.26□□□□□ -2.37
DDX56Q9NY93 AC093423.1-201ENST00000440817 142 ntBASIC0.25□□□□□ -2.37
DDX56Q9NY93 RNU6-162P-201ENST00000516228 103 ntBASIC0.25□□□□□ -2.37
DDX56Q9NY93 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
DDX56Q9NY93 SNORD4B-201ENST00000459083 72 ntBASIC0.24□□□□□ -2.37
DDX56Q9NY93 MIRLET7F1-201ENST00000362202 87 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 Y_RNA.239-201ENST00000364444 113 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 RNU6-519P-201ENST00000410590 108 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 U7.3-201ENST00000616123 62 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 MIR501-201ENST00000390204 84 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 RNU6-127P-201ENST00000390897 107 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 MTATP8P2-201ENST00000435212 202 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 RNU6-1057P-201ENST00000517162 102 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 MIR1273G-201ENST00000577677 100 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 HMGN2P22-201ENST00000427588 175 ntBASIC0.21□□□□□ -2.38
DDX56Q9NY93 MIR4460-201ENST00000577862 86 ntBASIC0.21□□□□□ -2.38
DDX56Q9NY93 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
DDX56Q9NY93 SNORD116-10-201ENST00000363791 102 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 RNU6-132P-201ENST00000383863 107 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 RNU6-147P-201ENST00000383983 107 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 MIR643-201ENST00000385267 97 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 RNU6-935P-201ENST00000410371 100 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 Y_RNA.190-201ENST00000363964 101 ntBASIC0.19□□□□□ -2.38
DDX56Q9NY93 YWHAEP2-201ENST00000580066 112 ntBASIC0.19□□□□□ -2.38
DDX56Q9NY93 MIR548AD-201ENST00000584780 82 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms