Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 Y_RNA.283-201ENST00000364798 112 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RNU6-215P-201ENST00000365169 102 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 SNORD115-44-201ENST00000365391 82 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 SNORA2A-201ENST00000383885 135 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 Y_RNA.648-201ENST00000459455 110 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 AC108740.1-201ENST00000498629 225 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RNU6-287P-201ENST00000516230 98 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RNU6-1232P-201ENST00000516299 86 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 RN7SL793P-201ENST00000583259 296 ntBASIC0.35□□□□□ -2.35
DDX56Q9NY93 SNORD114-23-201ENST00000363536 72 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 RNA5SP193-201ENST00000410353 107 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 Y_RNA.596-201ENST00000410462 109 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.34□□□□□ -2.36
DDX56Q9NY93 RNU6-766P-201ENST00000362478 107 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 VTRNA1-3-201ENST00000365645 89 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 MIR760-201ENST00000390220 80 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 RNU6-644P-201ENST00000391155 98 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 AL031737.1-201ENST00000450125 223 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 RNU7-74P-201ENST00000459104 62 ntBASIC0.33□□□□□ -2.36
DDX56Q9NY93 MIR450A1-201ENST00000362262 91 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 RNU6-509P-201ENST00000363519 107 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR617-201ENST00000385030 97 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 RNA5SP484-201ENST00000458857 111 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR2113-201ENST00000459007 91 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 RNU6-919P-201ENST00000516731 104 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 Y_RNA.705-201ENST00000516862 110 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR4315-1-201ENST00000636800 73 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 MIR4315-2-201ENST00000640925 73 ntBASIC0.32□□□□□ -2.36
DDX56Q9NY93 SNORA9.1-201ENST00000362412 131 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 Y_RNA.36-201ENST00000362602 112 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 SNORA63.4-201ENST00000362763 126 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 MIR519E-201ENST00000385075 84 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 AC069113.3-201ENST00000521019 150 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 NAMPTP3-201ENST00000569273 224 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 MTRNR2L2-201ENST00000604882 87 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 Y_RNA.818-201ENST00000618813 71 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 AC073869.9-201ENST00000641610 120 ntBASIC0.31□□□□□ -2.36
DDX56Q9NY93 Y_RNA.107-201ENST00000363190 121 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 Y_RNA.207-201ENST00000364142 106 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 SNORD101-201ENST00000384027 73 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNY1P4-201ENST00000384595 115 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU6-972P-201ENST00000391208 107 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU7-85P-201ENST00000458851 63 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU7-61P-201ENST00000515897 61 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU7-129P-201ENST00000516128 62 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 MIR4696-201ENST00000581431 70 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 MIR4536-1-201ENST00000583537 88 ntBASIC0.3□□□□□ -2.36
DDX56Q9NY93 RNU6-664P-201ENST00000362381 107 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 Y_RNA.93-201ENST00000363066 109 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 SNORD58A-201ENST00000383875 65 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 AL035461.1-201ENST00000421490 332 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 RNU6-75P-201ENST00000515944 104 ntBASIC0.29□□□□□ -2.36
DDX56Q9NY93 SNORD114-26-201ENST00000363543 72 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU6-755P-201ENST00000364400 103 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU1-141P-201ENST00000364623 158 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 Y_RNA.466-201ENST00000384294 113 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 Y_RNA.540-201ENST00000384638 111 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 SNORD110-201ENST00000408189 75 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU6-887P-201ENST00000410660 100 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNU6-65P-201ENST00000516332 98 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 RNA5SP480-201ENST00000516840 109 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 MIR5706-201ENST00000579841 80 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 MIR499B-201ENST00000636498 73 ntBASIC0.28□□□□□ -2.36
DDX56Q9NY93 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
DDX56Q9NY93 Y_RNA.96-201ENST00000363092 109 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 RNA5SP128-201ENST00000365305 116 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 AC006210.1-201ENST00000424882 111 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 U7.6-201ENST00000610841 64 ntBASIC0.27□□□□□ -2.37
DDX56Q9NY93 RNU6-44P-201ENST00000384045 107 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 Y_RNA.544-201ENST00000384650 113 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 MIR193B-201ENST00000384907 83 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.26□□□□□ -2.37
DDX56Q9NY93 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.26□□□□□ -2.37
DDX56Q9NY93 AC093423.1-201ENST00000440817 142 ntBASIC0.25□□□□□ -2.37
DDX56Q9NY93 RNU6-162P-201ENST00000516228 103 ntBASIC0.25□□□□□ -2.37
DDX56Q9NY93 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
DDX56Q9NY93 SNORD4B-201ENST00000459083 72 ntBASIC0.24□□□□□ -2.37
DDX56Q9NY93 MIRLET7F1-201ENST00000362202 87 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 Y_RNA.239-201ENST00000364444 113 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 RNU6-519P-201ENST00000410590 108 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 U7.3-201ENST00000616123 62 ntBASIC0.23□□□□□ -2.37
DDX56Q9NY93 MIR501-201ENST00000390204 84 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 RNU6-127P-201ENST00000390897 107 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 MTATP8P2-201ENST00000435212 202 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 RNU6-1057P-201ENST00000517162 102 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 MIR1273G-201ENST00000577677 100 ntBASIC0.22□□□□□ -2.37
DDX56Q9NY93 HMGN2P22-201ENST00000427588 175 ntBASIC0.21□□□□□ -2.38
DDX56Q9NY93 MIR4460-201ENST00000577862 86 ntBASIC0.21□□□□□ -2.38
DDX56Q9NY93 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
DDX56Q9NY93 SNORD116-10-201ENST00000363791 102 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 RNU6-132P-201ENST00000383863 107 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 RNU6-147P-201ENST00000383983 107 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 MIR643-201ENST00000385267 97 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 RNU6-935P-201ENST00000410371 100 ntBASIC0.2□□□□□ -2.38
DDX56Q9NY93 Y_RNA.190-201ENST00000363964 101 ntBASIC0.19□□□□□ -2.38
DDX56Q9NY93 YWHAEP2-201ENST00000580066 112 ntBASIC0.19□□□□□ -2.38
DDX56Q9NY93 MIR548AD-201ENST00000584780 82 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms