Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU6-523P-201ENST00000516304 54 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 MIR3134-201ENST00000579433 74 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 MIR4524B-201ENST00000581569 115 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 MIR3920-201ENST00000581751 86 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 AC104984.5-201ENST00000586878 94 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 AC067863.3-201ENST00000624172 122 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.31□□□□□ -2.2
UBE3DQ7Z6J8 RNU6-752P-201ENST00000516376 102 ntBASIC1.31□□□□□ -2.2
UBE3DQ7Z6J8 RNU6-70P-201ENST00000516438 60 ntBASIC1.31□□□□□ -2.2
UBE3DQ7Z6J8 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.31□□□□□ -2.2
UBE3DQ7Z6J8 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.31□□□□□ -2.2
UBE3DQ7Z6J8 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
UBE3DQ7Z6J8 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 SNORD114-24-201ENST00000365029 72 ntBASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 MIR573-201ENST00000384964 99 ntBASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 RNU6-1177P-201ENST00000391058 104 ntBASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 RNU7-104P-201ENST00000459398 79 ntBASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 AC004223.1-201ENST00000479840 271 ntBASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 MIR4484-201ENST00000582855 83 ntBASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
UBE3DQ7Z6J8 RNU6-154P-201ENST00000384306 106 ntBASIC1.29□□□□□ -2.2
UBE3DQ7Z6J8 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.29□□□□□ -2.2
UBE3DQ7Z6J8 MIR7974-201ENST00000615835 79 ntBASIC1.29□□□□□ -2.2
UBE3DQ7Z6J8 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.29□□□□□ -2.2
UBE3DQ7Z6J8 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.29□□□□□ -2.2
UBE3DQ7Z6J8 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
UBE3DQ7Z6J8 SNORA25.8-201ENST00000364831 128 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 RNU4-45P-201ENST00000365469 141 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 Y_RNA.371-201ENST00000365591 113 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 SNORA8.1-201ENST00000384250 140 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 SNORD28-201ENST00000384706 75 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 RNU6-587P-201ENST00000391282 106 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 RNU7-95P-201ENST00000459222 64 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 AC114801.3-201ENST00000510231 177 ntBASIC1.28□□□□□ -2.2
UBE3DQ7Z6J8 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
UBE3DQ7Z6J8 SNORA7.1-201ENST00000363750 139 ntBASIC1.27□□□□□ -2.21
UBE3DQ7Z6J8 SNORD41.1-201ENST00000391000 69 ntBASIC1.27□□□□□ -2.21
UBE3DQ7Z6J8 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-634P-201ENST00000459134 106 ntBASIC1.27□□□□□ -2.21
UBE3DQ7Z6J8 AC068338.1-201ENST00000565567 176 ntBASIC1.27□□□□□ -2.21
UBE3DQ7Z6J8 MIR548AG2-201ENST00000581228 64 ntBASIC1.27□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-824P-201ENST00000363724 104 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 MIR618-201ENST00000385287 98 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 MIR758-201ENST00000390227 88 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-482P-201ENST00000391068 107 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 RNU7-24P-201ENST00000458867 62 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-274P-201ENST00000459566 107 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-687P-201ENST00000516443 89 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-1015P-201ENST00000517121 99 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 AC244669.1-204ENST00000621564 178 ntBASIC1.26□□□□□ -2.21
UBE3DQ7Z6J8 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-788P-201ENST00000390967 104 ntBASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-1052P-201ENST00000411398 104 ntBASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 AP1B1P2-201ENST00000416196 106 ntBASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 SNORD124-201ENST00000459577 104 ntBASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 RNA5SP255-201ENST00000516370 107 ntBASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-719P-201ENST00000516671 104 ntBASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 RNA5SP404-201ENST00000517118 132 ntBASIC1.25□□□□□ -2.21
UBE3DQ7Z6J8 SNORD18A-201ENST00000363753 72 ntBASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-590P-201ENST00000365039 107 ntBASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 MIR644A-201ENST00000385262 94 ntBASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 RNU6-539P-201ENST00000516665 103 ntBASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 RNA5SP47-201ENST00000517230 109 ntBASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 MIR4421-201ENST00000578133 69 ntBASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 MIR3675-201ENST00000583661 73 ntBASIC1.24□□□□□ -2.21
UBE3DQ7Z6J8 MIR519E-201ENST00000385075 84 ntBASIC1.23□□□□□ -2.21
UBE3DQ7Z6J8 SNORD75.2-201ENST00000408784 58 ntBASIC1.23□□□□□ -2.21
UBE3DQ7Z6J8 RNU1-92P-201ENST00000517017 135 ntBASIC1.23□□□□□ -2.21
UBE3DQ7Z6J8 MIR3612-201ENST00000579753 87 ntBASIC1.23□□□□□ -2.21
UBE3DQ7Z6J8 MIR4769-201ENST00000584126 77 ntBASIC1.23□□□□□ -2.21
UBE3DQ7Z6J8 MIR3660-201ENST00000584845 100 ntBASIC1.23□□□□□ -2.21
UBE3DQ7Z6J8 MIR548O2-201ENST00000616090 70 ntBASIC1.23□□□□□ -2.21
UBE3DQ7Z6J8 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
UBE3DQ7Z6J8 RNA5SP432-201ENST00000362480 116 ntBASIC1.22□□□□□ -2.21
UBE3DQ7Z6J8 MIR150-201ENST00000385048 84 ntBASIC1.22□□□□□ -2.21
UBE3DQ7Z6J8 SNORA40.6-201ENST00000391153 128 ntBASIC1.22□□□□□ -2.21
UBE3DQ7Z6J8 SCARNA16.5-201ENST00000517114 183 ntBASIC1.22□□□□□ -2.21
UBE3DQ7Z6J8 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.22□□□□□ -2.21
UBE3DQ7Z6J8 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
UBE3DQ7Z6J8 RNU6-1241P-201ENST00000384536 107 ntBASIC1.21□□□□□ -2.22
UBE3DQ7Z6J8 MIR548L-201ENST00000408303 86 ntBASIC1.21□□□□□ -2.22
UBE3DQ7Z6J8 MIR3678-201ENST00000578455 94 ntBASIC1.21□□□□□ -2.22
UBE3DQ7Z6J8 MIR8053-201ENST00000613344 75 ntBASIC1.21□□□□□ -2.22
UBE3DQ7Z6J8 RNU6-726P-201ENST00000364680 107 ntBASIC1.2□□□□□ -2.22
UBE3DQ7Z6J8 MIR154-201ENST00000385243 84 ntBASIC1.2□□□□□ -2.22
UBE3DQ7Z6J8 AL078603.1-201ENST00000603824 313 ntBASIC1.2□□□□□ -2.22
UBE3DQ7Z6J8 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.2□□□□□ -2.22
UBE3DQ7Z6J8 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.2□□□□□ -2.22
UBE3DQ7Z6J8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
UBE3DQ7Z6J8 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.2□□□□□ -2.22
UBE3DQ7Z6J8 MIR378A-201ENST00000362177 66 ntBASIC1.19□□□□□ -2.22
UBE3DQ7Z6J8 RNU6-495P-201ENST00000362995 107 ntBASIC1.19□□□□□ -2.22
UBE3DQ7Z6J8 RNU6-330P-201ENST00000363015 107 ntBASIC1.18□□□□□ -2.22
UBE3DQ7Z6J8 RNU6-382P-201ENST00000365181 106 ntBASIC1.18□□□□□ -2.22
UBE3DQ7Z6J8 AC093423.1-201ENST00000440817 142 ntBASIC1.18□□□□□ -2.22
UBE3DQ7Z6J8 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms