Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 Y_RNA.371-201ENST00000365591 113 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 MIR9-2-201ENST00000384838 87 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
USP43Q70EL4 RNU7-185P-201ENST00000459215 60 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 Y_RNA.809-201ENST00000516058 95 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 RNU6-1265P-201ENST00000516342 103 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 RNU7-40P-201ENST00000516397 64 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
USP43Q70EL4 U6.81-201ENST00000612550 106 ntBASIC1.05□□□□□ -2.24
USP43Q70EL4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
USP43Q70EL4 RNU6-403P-201ENST00000363163 104 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 Y_RNA.258-201ENST00000364613 105 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 SNORA8.1-201ENST00000384250 140 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 MIR154-201ENST00000385243 84 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 AC048334.1-201ENST00000477975 159 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 RNA5SP480-201ENST00000516840 109 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.04□□□□□ -2.24
USP43Q70EL4 MIR548H5-201ENST00000580314 60 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.04□□□□□ -2.24
USP43Q70EL4 RNU6-369P-201ENST00000362515 102 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 Y_RNA.239-201ENST00000364444 113 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 RNU1-93P-201ENST00000364704 169 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 SNORD101-201ENST00000384027 73 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 SNORD45A-201ENST00000384512 84 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 Y_RNA.540-201ENST00000384638 111 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 SNORA75.2-201ENST00000391138 150 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 SNORA75.3-201ENST00000391231 150 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 AC097510.1-201ENST00000510945 133 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 MIR3675-201ENST00000583661 73 ntBASIC1.03□□□□□ -2.24
USP43Q70EL4 SNORD83.1-201ENST00000411362 77 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.02□□□□□ -2.25
USP43Q70EL4 OR2A41P-201ENST00000473586 105 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 SNORA31.2-201ENST00000516019 134 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 RN7SKP88-201ENST00000516847 250 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 RNU6-765P-201ENST00000516916 99 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 AC036111.3-201ENST00000526389 112 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 7SK.8-201ENST00000612110 250 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 7SK.11-201ENST00000615477 250 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 MIR6515-201ENST00000619843 57 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 7SK.13-201ENST00000622040 250 ntBASIC1.02□□□□□ -2.25
USP43Q70EL4 RNU6-1187P-201ENST00000364771 110 ntBASIC1.01□□□□□ -2.25
USP43Q70EL4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
USP43Q70EL4 RNU6-630P-201ENST00000391258 106 ntBASIC1.01□□□□□ -2.25
USP43Q70EL4 RNU6-1052P-201ENST00000411398 104 ntBASIC1.01□□□□□ -2.25
USP43Q70EL4 AC097635.1-201ENST00000450678 155 ntBASIC1.01□□□□□ -2.25
USP43Q70EL4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.01□□□□□ -2.25
USP43Q70EL4 RNU6-719P-201ENST00000516671 104 ntBASIC1.01□□□□□ -2.25
USP43Q70EL4 AC023934.1-201ENST00000574529 2389 ntBASIC1.01□□□□□ -2.25
USP43Q70EL4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
USP43Q70EL4 MIR101-2-201ENST00000362195 79 ntBASIC1□□□□□ -2.25
USP43Q70EL4 MIR96-201ENST00000362288 78 ntBASIC1□□□□□ -2.25
USP43Q70EL4 SNORD113.1-201ENST00000363280 73 ntBASIC1□□□□□ -2.25
USP43Q70EL4 RNU6-681P-201ENST00000364012 104 ntBASIC1□□□□□ -2.25
USP43Q70EL4 SNORD113.3-201ENST00000364630 78 ntBASIC1□□□□□ -2.25
USP43Q70EL4 Y_RNA.443-201ENST00000384135 111 ntBASIC1□□□□□ -2.25
USP43Q70EL4 RNU6-987P-201ENST00000384759 104 ntBASIC1□□□□□ -2.25
USP43Q70EL4 MIR222-201ENST00000384992 110 ntBASIC1□□□□□ -2.25
USP43Q70EL4 MIR125B2-201ENST00000385128 89 ntBASIC1□□□□□ -2.25
USP43Q70EL4 RNU7-21P-201ENST00000459430 62 ntBASIC1□□□□□ -2.25
USP43Q70EL4 RNU6-1223P-201ENST00000517124 104 ntBASIC1□□□□□ -2.25
USP43Q70EL4 MIR4295-201ENST00000585286 85 ntBASIC1□□□□□ -2.25
USP43Q70EL4 RNU7-10P-201ENST00000607194 63 ntBASIC1□□□□□ -2.25
USP43Q70EL4 AC022709.1-201ENST00000615967 87 ntBASIC1□□□□□ -2.25
USP43Q70EL4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1□□□□□ -2.25
USP43Q70EL4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.99□□□□□ -2.25
USP43Q70EL4 SNORD45.1-201ENST00000363181 77 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 RNY4P3-201ENST00000365254 95 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 RNU6-499P-201ENST00000365615 107 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 MIR599-201ENST00000385069 95 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 RNU4-37P-201ENST00000410214 84 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 RNU6-935P-201ENST00000410371 100 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 AC244505.6-201ENST00000452829 130 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 AC087343.1-201ENST00000477341 475 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 MIR548AG2-201ENST00000581228 64 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 AC106800.4-201ENST00000614905 153 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 AL109933.3-201ENST00000619095 188 ntBASIC0.99□□□□□ -2.25
USP43Q70EL4 RNA5SP327-201ENST00000362494 101 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 SNORA25.4-201ENST00000363666 124 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 RNU6-934P-201ENST00000365154 107 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 RNU6-382P-201ENST00000365181 106 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 RNU6-669P-201ENST00000365575 107 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 MIR451A-201ENST00000385059 72 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 MIR1257-201ENST00000408490 117 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 AC110620.1-201ENST00000416042 228 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.98□□□□□ -2.25
USP43Q70EL4 RPS29P1-201ENST00000465274 159 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 SNORD79.1-201ENST00000516069 84 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 RNU6-287P-201ENST00000516230 98 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 RNU6-881P-201ENST00000516813 102 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 AC138907.6-201ENST00000568401 126 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 AC138869.1-201ENST00000568623 124 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 MIR4511-201ENST00000582784 87 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 MIR151B-201ENST00000584249 96 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.98□□□□□ -2.25
USP43Q70EL4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.97□□□□□ -2.25
USP43Q70EL4 SNORD114-27-201ENST00000363766 70 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 202.4 ms