Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-287P-201ENST00000516230 98 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 RNU1-29P-201ENST00000606574 126 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 AP001318.4-201ENST00000616637 121 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 AL162376.1-201ENST00000624117 175 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 MIRLET7F1-201ENST00000362202 87 ntBASIC0.36□□□□□ -2.35
HOXA1P49639 RNU6-1126P-201ENST00000384002 107 ntBASIC0.36□□□□□ -2.35
HOXA1P49639 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.36□□□□□ -2.35
HOXA1P49639 RNU2-59P-201ENST00000410482 191 ntBASIC0.36□□□□□ -2.35
HOXA1P49639 MTATP8P2-201ENST00000435212 202 ntBASIC0.36□□□□□ -2.35
HOXA1P49639 RNA5SP499-201ENST00000363982 119 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 RNU6-153P-201ENST00000364422 104 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 Y_RNA.290-201ENST00000364879 114 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 Y_RNA.348-201ENST00000365403 103 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 RNU6-32P-201ENST00000383948 107 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 RNU6-13P-201ENST00000384248 107 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 RNU6-12P-201ENST00000384604 107 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 RNU6-41P-201ENST00000384741 107 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 RNU6-972P-201ENST00000391208 107 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 RNA5SP484-201ENST00000458857 111 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 MIR2113-201ENST00000459007 91 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 MIR6513-201ENST00000621188 64 ntBASIC0.35□□□□□ -2.35
HOXA1P49639 Y_RNA.81-201ENST00000362997 102 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 Y_RNA.207-201ENST00000364142 106 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 MIR519E-201ENST00000385075 84 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 Y_RNA.596-201ENST00000410462 109 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 RNU6-229P-201ENST00000516614 102 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 AC026421.1-201ENST00000519101 163 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 NAMPTP3-201ENST00000569273 224 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 MIR4696-201ENST00000581431 70 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 MIR4536-1-201ENST00000583537 88 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 AC022709.1-201ENST00000615967 87 ntBASIC0.34□□□□□ -2.36
HOXA1P49639 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.34□□□□□ -2.36
HOXA1P49639 RNU6-640P-201ENST00000363693 105 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 RNU6-132P-201ENST00000383863 107 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 SNORD101-201ENST00000384027 73 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 RNU6-815P-201ENST00000384080 113 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 RNA5SP89-201ENST00000410300 108 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 RNU6-519P-201ENST00000410590 108 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 Y_RNA.609-201ENST00000410669 89 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 RNU7-129P-201ENST00000516128 62 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 RNU6-65P-201ENST00000516332 98 ntBASIC0.33□□□□□ -2.36
HOXA1P49639 RNU6-664P-201ENST00000362381 107 ntBASIC0.32□□□□□ -2.36
HOXA1P49639 MIR488-201ENST00000365739 83 ntBASIC0.32□□□□□ -2.36
HOXA1P49639 RNU6-905P-201ENST00000384434 107 ntBASIC0.32□□□□□ -2.36
HOXA1P49639 MIR598-201ENST00000384868 97 ntBASIC0.32□□□□□ -2.36
HOXA1P49639 SNORD4B-201ENST00000459083 72 ntBASIC0.32□□□□□ -2.36
HOXA1P49639 SNORA40.13-201ENST00000516379 120 ntBASIC0.32□□□□□ -2.36
HOXA1P49639 MTRNR2L2-201ENST00000604882 87 ntBASIC0.32□□□□□ -2.36
HOXA1P49639 RNA5SP62-201ENST00000363457 110 ntBASIC0.31□□□□□ -2.36
HOXA1P49639 MIR760-201ENST00000390220 80 ntBASIC0.31□□□□□ -2.36
HOXA1P49639 AC073261.1-201ENST00000429409 121 ntBASIC0.31□□□□□ -2.36
HOXA1P49639 RNU6-168P-201ENST00000516189 101 ntBASIC0.31□□□□□ -2.36
HOXA1P49639 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.31□□□□□ -2.36
HOXA1P49639 SNORD115-44-201ENST00000365391 82 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 RNY1P7-201ENST00000384743 110 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 MIR617-201ENST00000385030 97 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 RNU6-863P-201ENST00000515989 104 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 Y_RNA.677-201ENST00000516401 85 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 AC243829.6-201ENST00000612652 106 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 MALAT1.1-201ENST00000618249 95 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 AC243829.3-201ENST00000622177 108 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 MIR499B-201ENST00000636498 73 ntBASIC0.3□□□□□ -2.36
HOXA1P49639 RNU4-32P-201ENST00000363404 141 ntBASIC0.29□□□□□ -2.36
HOXA1P49639 SNORD116-10-201ENST00000363791 102 ntBASIC0.29□□□□□ -2.36
HOXA1P49639 MIR216A-201ENST00000385063 110 ntBASIC0.29□□□□□ -2.36
HOXA1P49639 RNA5SP292-201ENST00000390974 118 ntBASIC0.29□□□□□ -2.36
HOXA1P49639 AC006210.1-201ENST00000424882 111 ntBASIC0.29□□□□□ -2.36
HOXA1P49639 RNU6-158P-201ENST00000517104 100 ntBASIC0.29□□□□□ -2.36
HOXA1P49639 Y_RNA.96-201ENST00000363092 109 ntBASIC0.28□□□□□ -2.36
HOXA1P49639 RNU1-141P-201ENST00000364623 158 ntBASIC0.28□□□□□ -2.36
HOXA1P49639 SNORA2A-201ENST00000383885 135 ntBASIC0.28□□□□□ -2.36
HOXA1P49639 MIR489-201ENST00000384923 84 ntBASIC0.28□□□□□ -2.36
HOXA1P49639 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
HOXA1P49639 MIR3064-201ENST00000581130 66 ntBASIC0.28□□□□□ -2.36
HOXA1P49639 VTRNA1-3-201ENST00000365645 89 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 MIR451A-201ENST00000385059 72 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 SNORD90-201ENST00000391145 111 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 SNORD110-201ENST00000408189 75 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 RNU6-1052P-201ENST00000411398 104 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 AC093423.1-201ENST00000440817 142 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 RNA5SP436-201ENST00000516020 115 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 RNU6-719P-201ENST00000516671 104 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 MIR4473-201ENST00000583731 91 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 MIR7111-201ENST00000619751 72 ntBASIC0.27□□□□□ -2.37
HOXA1P49639 RNU6-509P-201ENST00000363519 107 ntBASIC0.26□□□□□ -2.37
HOXA1P49639 Y_RNA.239-201ENST00000364444 113 ntBASIC0.26□□□□□ -2.37
HOXA1P49639 MIR936-201ENST00000401264 98 ntBASIC0.26□□□□□ -2.37
HOXA1P49639 HMGN2P22-201ENST00000427588 175 ntBASIC0.26□□□□□ -2.37
HOXA1P49639 RNU5B-6P-201ENST00000516765 68 ntBASIC0.26□□□□□ -2.37
HOXA1P49639 MIR4711-201ENST00000578274 70 ntBASIC0.26□□□□□ -2.37
HOXA1P49639 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.26□□□□□ -2.37
HOXA1P49639 AC090625.1-201ENST00000357130 210 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 Y_RNA.36-201ENST00000362602 112 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 SNORD114-23-201ENST00000363536 72 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 SNORD115-27-201ENST00000364430 82 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNU6-1131P-201ENST00000364955 107 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNU6-811P-201ENST00000384069 107 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNY1P4-201ENST00000384595 115 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 MIR501-201ENST00000390204 84 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNU6-935P-201ENST00000410371 100 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 177.6 ms