Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RPS29P23-201ENST00000458635 123 ntBASIC1.34□□□□□ -2.19
LIMS1P48059 AC097510.1-201ENST00000510945 133 ntBASIC1.34□□□□□ -2.19
LIMS1P48059 MIR7974-201ENST00000615835 79 ntBASIC1.34□□□□□ -2.19
LIMS1P48059 ZNF209P-201ENST00000593450 2304 ntBASIC1.33□□□□□ -2.2
LIMS1P48059 RNA5SP403-201ENST00000363598 108 ntBASIC1.33□□□□□ -2.2
LIMS1P48059 RNU6-392P-201ENST00000364926 101 ntBASIC1.33□□□□□ -2.2
LIMS1P48059 MIR100-201ENST00000385259 80 ntBASIC1.33□□□□□ -2.2
LIMS1P48059 SNORA67.6-201ENST00000391093 99 ntBASIC1.33□□□□□ -2.2
LIMS1P48059 SNORA31.14-201ENST00000516728 116 ntBASIC1.33□□□□□ -2.2
LIMS1P48059 SNORA70.22-201ENST00000517160 124 ntBASIC1.33□□□□□ -2.2
LIMS1P48059 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
LIMS1P48059 MIR1-1-201ENST00000362147 71 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 RNU6-330P-201ENST00000363015 107 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 Y_RNA.174-201ENST00000363781 105 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.32□□□□□ -2.2
LIMS1P48059 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 RNU6-287P-201ENST00000516230 98 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 RMST_2.1-201ENST00000617263 136 ntBASIC1.32□□□□□ -2.2
LIMS1P48059 RNU6-824P-201ENST00000363724 104 ntBASIC1.31□□□□□ -2.2
LIMS1P48059 U3.27-201ENST00000391237 200 ntBASIC1.31□□□□□ -2.2
LIMS1P48059 AL354695.1-201ENST00000427935 228 ntBASIC1.31□□□□□ -2.2
LIMS1P48059 MIR2113-201ENST00000459007 91 ntBASIC1.31□□□□□ -2.2
LIMS1P48059 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
LIMS1P48059 RNU6-681P-201ENST00000364012 104 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 Y_RNA.224-201ENST00000364308 111 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 Y_RNA.371-201ENST00000365591 113 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 RNU6-1241P-201ENST00000384536 107 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 MIR520F-201ENST00000384824 87 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 AC002429.1-201ENST00000437672 148 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 AC068338.1-201ENST00000565567 176 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 AL157834.3-201ENST00000615543 103 ntBASIC1.3□□□□□ -2.2
LIMS1P48059 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
LIMS1P48059 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
LIMS1P48059 SNORA7.1-201ENST00000363750 139 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 SNORA8.1-201ENST00000384250 140 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 MIR150-201ENST00000385048 84 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 RNU1-92P-201ENST00000517017 135 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 SNORA31.24-201ENST00000517232 57 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 RNU7-161P-201ENST00000517289 62 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 MIR548AG2-201ENST00000581228 64 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
LIMS1P48059 MIR6504-201ENST00000613520 61 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.29□□□□□ -2.2
LIMS1P48059 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
LIMS1P48059 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
LIMS1P48059 RNU6-1126P-201ENST00000384002 107 ntBASIC1.28□□□□□ -2.2
LIMS1P48059 MIR758-201ENST00000390227 88 ntBASIC1.28□□□□□ -2.2
LIMS1P48059 AC067940.1-201ENST00000458411 300 ntBASIC1.28□□□□□ -2.2
LIMS1P48059 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.28□□□□□ -2.2
LIMS1P48059 RNU7-13P-201ENST00000516413 62 ntBASIC1.28□□□□□ -2.2
LIMS1P48059 MIR3920-201ENST00000581751 86 ntBASIC1.28□□□□□ -2.2
LIMS1P48059 SNORD115-24-201ENST00000363528 82 ntBASIC1.27□□□□□ -2.21
LIMS1P48059 Y_RNA.258-201ENST00000364613 105 ntBASIC1.27□□□□□ -2.21
LIMS1P48059 RNU6-540P-201ENST00000384622 101 ntBASIC1.27□□□□□ -2.21
LIMS1P48059 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
LIMS1P48059 RNU6-1177P-201ENST00000391058 104 ntBASIC1.27□□□□□ -2.21
LIMS1P48059 RNU6-1052P-201ENST00000411398 104 ntBASIC1.27□□□□□ -2.21
LIMS1P48059 RNU6-719P-201ENST00000516671 104 ntBASIC1.27□□□□□ -2.21
LIMS1P48059 RNU6-1057P-201ENST00000517162 102 ntBASIC1.27□□□□□ -2.21
LIMS1P48059 MIR26B-201ENST00000362251 77 ntBASIC1.26□□□□□ -2.21
LIMS1P48059 SNORA25-201ENST00000384384 134 ntBASIC1.26□□□□□ -2.21
LIMS1P48059 MIR1276-201ENST00000408707 83 ntBASIC1.26□□□□□ -2.21
LIMS1P48059 MIR4421-201ENST00000578133 69 ntBASIC1.26□□□□□ -2.21
LIMS1P48059 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.25□□□□□ -2.21
LIMS1P48059 SNORD115-31-201ENST00000365318 82 ntBASIC1.25□□□□□ -2.21
LIMS1P48059 Y_RNA.386-201ENST00000383913 105 ntBASIC1.25□□□□□ -2.21
LIMS1P48059 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
LIMS1P48059 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
LIMS1P48059 AC002350.1-201ENST00000490759 375 ntBASIC1.25□□□□□ -2.21
LIMS1P48059 RNU6-1110P-201ENST00000516462 101 ntBASIC1.25□□□□□ -2.21
LIMS1P48059 MIR3675-201ENST00000583661 73 ntBASIC1.25□□□□□ -2.21
LIMS1P48059 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.25□□□□□ -2.21
LIMS1P48059 RNA5SP327-201ENST00000362494 101 ntBASIC1.24□□□□□ -2.21
LIMS1P48059 MIR19B1-201ENST00000384829 87 ntBASIC1.24□□□□□ -2.21
LIMS1P48059 MIR154-201ENST00000385243 84 ntBASIC1.24□□□□□ -2.21
LIMS1P48059 RNU6-752P-201ENST00000516376 102 ntBASIC1.24□□□□□ -2.21
LIMS1P48059 RNU6-135P-201ENST00000516769 101 ntBASIC1.24□□□□□ -2.21
LIMS1P48059 MIR6078-201ENST00000611069 100 ntBASIC1.24□□□□□ -2.21
LIMS1P48059 RNU6-649P-201ENST00000384463 107 ntBASIC1.23□□□□□ -2.21
LIMS1P48059 MIR222-201ENST00000384992 110 ntBASIC1.23□□□□□ -2.21
LIMS1P48059 MIR617-201ENST00000385030 97 ntBASIC1.23□□□□□ -2.21
LIMS1P48059 MIR216B-201ENST00000390186 82 ntBASIC1.23□□□□□ -2.21
LIMS1P48059 RNU1-123P-201ENST00000458950 160 ntBASIC1.23□□□□□ -2.21
LIMS1P48059 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.23□□□□□ -2.21
LIMS1P48059 RNU6-382P-201ENST00000365181 106 ntBASIC1.22□□□□□ -2.21
LIMS1P48059 RNU6-42P-201ENST00000384165 107 ntBASIC1.22□□□□□ -2.21
LIMS1P48059 MIR1265-201ENST00000408444 86 ntBASIC1.22□□□□□ -2.21
LIMS1P48059 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.22□□□□□ -2.21
LIMS1P48059 RNU7-24P-201ENST00000458867 62 ntBASIC1.22□□□□□ -2.21
LIMS1P48059 AL353770.2-201ENST00000620024 78 ntBASIC1.22□□□□□ -2.21
LIMS1P48059 MIR489-201ENST00000384923 84 ntBASIC1.21□□□□□ -2.22
LIMS1P48059 MIR519E-201ENST00000385075 84 ntBASIC1.21□□□□□ -2.22
LIMS1P48059 RNU7-104P-201ENST00000459398 79 ntBASIC1.21□□□□□ -2.22
LIMS1P48059 RNA5SP220-201ENST00000516298 104 ntBASIC1.21□□□□□ -2.22
LIMS1P48059 MIR4639-201ENST00000584938 69 ntBASIC1.21□□□□□ -2.22
LIMS1P48059 AL078603.1-201ENST00000603824 313 ntBASIC1.21□□□□□ -2.22
LIMS1P48059 AL136317.1-201ENST00000612653 226 ntBASIC1.21□□□□□ -2.22
LIMS1P48059 U6.111-201ENST00000636093 83 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms