Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNORD114-28-201ENST00000363610 72 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 RNU6-957P-201ENST00000363652 99 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 RNU6-46P-201ENST00000383860 107 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 RNU6-480P-201ENST00000384332 107 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 MIR106A-201ENST00000384870 81 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 MIR1265-201ENST00000408444 86 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 RNU6-257P-201ENST00000410238 98 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 AC093423.1-201ENST00000440817 142 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 RNU6-772P-201ENST00000516042 105 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 RNU6-320P-201ENST00000516511 106 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 MIR4493-201ENST00000584016 73 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 U6.100-201ENST00000636230 99 ntBASIC-0.3□□□□□ -2.46
CDX1P47902 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.31□□□□□ -2.46
CDX1P47902 RNU6-466P-201ENST00000391224 103 ntBASIC-0.31□□□□□ -2.46
CDX1P47902 RNU6-346P-201ENST00000516288 111 ntBASIC-0.31□□□□□ -2.46
CDX1P47902 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.31□□□□□ -2.46
CDX1P47902 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.31□□□□□ -2.46
CDX1P47902 MIR6086-201ENST00000638065 55 ntBASIC-0.31□□□□□ -2.46
CDX1P47902 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.32□□□□□ -2.46
CDX1P47902 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.32□□□□□ -2.46
CDX1P47902 MIR181B2-201ENST00000385004 89 ntBASIC-0.32□□□□□ -2.46
CDX1P47902 RNA5SP476-201ENST00000516613 103 ntBASIC-0.32□□□□□ -2.46
CDX1P47902 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.32□□□□□ -2.46
CDX1P47902 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.32□□□□□ -2.46
CDX1P47902 MIR148A-201ENST00000362215 68 ntBASIC-0.33□□□□□ -2.46
CDX1P47902 RNU6-255P-201ENST00000516957 105 ntBASIC-0.33□□□□□ -2.46
CDX1P47902 MIR101-1-201ENST00000362265 75 ntBASIC-0.34□□□□□ -2.46
CDX1P47902 RNA5SP275-201ENST00000363936 118 ntBASIC-0.34□□□□□ -2.46
CDX1P47902 RNU7-188P-201ENST00000517063 64 ntBASIC-0.34□□□□□ -2.46
CDX1P47902 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 RNY1P5-201ENST00000383890 115 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 SNORD101-201ENST00000384027 73 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 MT-TY-201ENST00000387409 66 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 RNA5SP300-201ENST00000391197 107 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 AC096531.1-201ENST00000419107 107 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 Z95118.1-201ENST00000421372 247 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.35□□□□□ -2.47
CDX1P47902 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 RNU7-107P-201ENST00000459121 61 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 RNU6-758P-201ENST00000516292 89 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 RNU6-971P-201ENST00000516920 106 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 AC007012.1-201ENST00000567192 175 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 MIR3666-201ENST00000607845 111 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 RN7SL660P-201ENST00000614852 299 ntBASIC-0.35□□□□□ -2.47
CDX1P47902 SNORD114-29-201ENST00000364819 70 ntBASIC-0.36□□□□□ -2.47
CDX1P47902 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.36□□□□□ -2.47
CDX1P47902 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.36□□□□□ -2.47
CDX1P47902 MIR577-201ENST00000385196 96 ntBASIC-0.36□□□□□ -2.47
CDX1P47902 SNORD126-201ENST00000459475 77 ntBASIC-0.36□□□□□ -2.47
CDX1P47902 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.36□□□□□ -2.47
CDX1P47902 MIR4679-2-201ENST00000578358 77 ntBASIC-0.36□□□□□ -2.47
CDX1P47902 RNU6-664P-201ENST00000362381 107 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 SNORD14C-201ENST00000365382 88 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 MIR604-201ENST00000384880 94 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 RNU6-907P-201ENST00000390924 102 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 AC109327.2-201ENST00000448339 378 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 snoU13.11-201ENST00000459219 104 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 MIR4694-201ENST00000578534 80 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 MIR8064-201ENST00000612863 90 ntBASIC-0.37□□□□□ -2.47
CDX1P47902 SNORD49B-201ENST00000365172 72 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 RNU6-154P-201ENST00000384306 106 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 MIR196A2-201ENST00000385189 110 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 RNU6-86P-201ENST00000606534 107 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 AL035470.1-201ENST00000622571 220 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 MIR4788-201ENST00000639104 80 ntBASIC-0.38□□□□□ -2.47
CDX1P47902 RNU6-832P-201ENST00000363319 107 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 RNA5SP368-201ENST00000364298 116 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 U8.6-201ENST00000364939 135 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 MIR216B-201ENST00000390186 82 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 RNA5SP25-201ENST00000410815 110 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 HAR1A.1-201ENST00000459583 118 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 AC068339.1-201ENST00000526965 141 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 MIR4696-201ENST00000581431 70 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 MIR548AE1-201ENST00000583292 70 ntBASIC-0.39□□□□□ -2.47
CDX1P47902 RNU6-80P-201ENST00000384195 107 ntBASIC-0.4□□□□□ -2.47
CDX1P47902 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.4□□□□□ -2.47
CDX1P47902 MIR548A1-201ENST00000385041 97 ntBASIC-0.4□□□□□ -2.47
CDX1P47902 AC108676.2-201ENST00000605225 163 ntBASIC-0.4□□□□□ -2.47
CDX1P47902 RNY3P2-201ENST00000362918 102 ntBASIC-0.41□□□□□ -2.48
CDX1P47902 RNA5SP451-201ENST00000410588 110 ntBASIC-0.41□□□□□ -2.48
CDX1P47902 RNU6-284P-201ENST00000411105 106 ntBASIC-0.41□□□□□ -2.48
CDX1P47902 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.41□□□□□ -2.48
CDX1P47902 MIR3671-201ENST00000580455 88 ntBASIC-0.41□□□□□ -2.48
CDX1P47902 SNORD114-11-201ENST00000363738 75 ntBASIC-0.42□□□□□ -2.48
CDX1P47902 MIR548A3-201ENST00000385297 97 ntBASIC-0.42□□□□□ -2.48
CDX1P47902 MIR4263-201ENST00000584745 83 ntBASIC-0.42□□□□□ -2.48
CDX1P47902 MIR3914-2-201ENST00000637339 95 ntBASIC-0.42□□□□□ -2.48
CDX1P47902 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.43□□□□□ -2.48
CDX1P47902 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.43□□□□□ -2.48
CDX1P47902 RNU6-811P-201ENST00000384069 107 ntBASIC-0.43□□□□□ -2.48
CDX1P47902 RNU6-935P-201ENST00000410371 100 ntBASIC-0.43□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 183.1 ms