Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 SNORD113.3-201ENST00000364630 78 ntBASIC1.4□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR203A-201ENST00000384836 110 ntBASIC1.4□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR320A-201ENST00000385302 82 ntBASIC1.4□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AL691482.2-201ENST00000457453 84 ntBASIC1.4□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.4□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU7-40P-201ENST00000516397 64 ntBASIC1.4□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 Y_RNA.164-201ENST00000363709 102 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 snoU13.9-201ENST00000458927 103 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC048334.1-201ENST00000477975 159 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-165P-201ENST00000517170 99 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC036111.3-201ENST00000526389 112 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR4422-201ENST00000581938 83 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR4676-201ENST00000583078 72 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AL353770.2-201ENST00000620024 78 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC103706.3-201ENST00000636297 85 ntBASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.39□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-1187P-201ENST00000364771 110 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 SNORD1A-201ENST00000364968 72 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 Y_RNA.327-201ENST00000365201 102 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-614P-201ENST00000384369 107 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 SNORA75.2-201ENST00000391138 150 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 SNORA40.6-201ENST00000391153 128 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 SNORA75.3-201ENST00000391231 150 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC079140.2-201ENST00000506193 142 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 NAMPTP3-201ENST00000569273 224 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR4781-201ENST00000585250 76 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC008608.1-201ENST00000603910 127 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 U6.59-201ENST00000615686 107 ntBASIC1.38□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RPS26P5-201ENST00000418544 335 ntBASIC1.37□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RPS29P23-201ENST00000458635 123 ntBASIC1.37□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU7-102P-201ENST00000458948 62 ntBASIC1.37□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC069503.3-201ENST00000618674 145 ntBASIC1.37□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-141P-201ENST00000410499 105 ntBASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC110620.1-201ENST00000416042 228 ntBASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU7-13P-201ENST00000516413 62 ntBASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR6078-201ENST00000611069 100 ntBASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 AC027335.2-201ENST00000624030 375 ntBASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-1065P-201ENST00000384513 106 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU1-78P-201ENST00000391248 165 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR938-201ENST00000401216 83 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU1-123P-201ENST00000458950 160 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-752P-201ENST00000516376 102 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR6509-201ENST00000614603 85 ntBASIC1.35□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 MIR302D-201ENST00000362275 68 ntBASIC1.34□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-668P-201ENST00000364180 107 ntBASIC1.34□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 U3.27-201ENST00000391237 200 ntBASIC1.34□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNU6-994P-201ENST00000410507 111 ntBASIC1.34□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 RNA5SP247-201ENST00000411181 105 ntBASIC1.34□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 SNORA31.2-201ENST00000516019 134 ntBASIC1.34□□□□□ -2.19
C1QTNF3-AMACRE9PGA6 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 SNORD115-24-201ENST00000363528 82 ntBASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-392P-201ENST00000364926 101 ntBASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 AC079150.2-201ENST00000443733 78 ntBASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 AC244505.6-201ENST00000452829 130 ntBASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-977P-201ENST00000516411 103 ntBASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 AL512310.8-201ENST00000550183 120 ntBASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MIR548AG2-201ENST00000581228 64 ntBASIC1.33□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 Y_RNA.32-201ENST00000362589 110 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 SNORD115-44-201ENST00000365391 82 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 Y_RNA.363-201ENST00000365529 113 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-1039P-201ENST00000383931 107 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 SNORD111-201ENST00000408139 94 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 SNORD75.2-201ENST00000408784 58 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MTND4LP1-201ENST00000446263 157 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 SNORA31.14-201ENST00000516728 116 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RN7SKP88-201ENST00000516847 250 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 7SK.8-201ENST00000612110 250 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 AC106800.4-201ENST00000614905 153 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 7SK.11-201ENST00000615477 250 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 7SK.13-201ENST00000622040 250 ntBASIC1.32□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MIR100-201ENST00000385259 80 ntBASIC1.31□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU7-104P-201ENST00000459398 79 ntBASIC1.31□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MIR4804-201ENST00000581683 73 ntBASIC1.31□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MIR3660-201ENST00000584845 100 ntBASIC1.31□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-54P-201ENST00000365563 107 ntBASIC1.3□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-1126P-201ENST00000384002 107 ntBASIC1.3□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU1-119P-201ENST00000391122 165 ntBASIC1.3□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-955P-201ENST00000410497 104 ntBASIC1.3□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 AC092634.7-201ENST00000621022 103 ntBASIC1.3□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-369P-201ENST00000362515 102 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-495P-201ENST00000362995 107 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MIR520F-201ENST00000384824 87 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MIR758-201ENST00000390227 88 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNA5SP61-201ENST00000516453 100 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNA5SP147-201ENST00000516493 109 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU7-161P-201ENST00000517289 62 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 MIR3920-201ENST00000581751 86 ntBASIC1.29□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 SNORD33-201ENST00000362761 85 ntBASIC1.28□□□□□ -2.2
C1QTNF3-AMACRE9PGA6 RNU6-1079P-201ENST00000362861 110 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 277 ms