Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR4419B-201ENST00000577260 68 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 MIR4804-201ENST00000581683 73 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 MIR1-1-201ENST00000362147 71 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 MIR942-201ENST00000401111 86 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 MIR4484-201ENST00000582855 83 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 uc_338.20-201ENST00000621563 178 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USP3Q9Y6I4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USP3Q9Y6I4 SNORD90-201ENST00000391145 111 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 Y_RNA.606-201ENST00000410579 103 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6-634P-201ENST00000459134 106 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6-548P-201ENST00000517083 115 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6-1015P-201ENST00000517121 99 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 MIR4524B-201ENST00000581569 115 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNA5SP432-201ENST00000362480 116 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNU6-587P-201ENST00000391282 106 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNU7-56P-201ENST00000458744 62 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 AC097510.1-201ENST00000510945 133 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNU6-340P-201ENST00000364005 107 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 MIR100-201ENST00000385259 80 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 MIR216B-201ENST00000390186 82 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 AC108210.2-201ENST00000503681 201 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 SNORA70.22-201ENST00000517160 124 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 RNU6-369P-201ENST00000362515 102 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 MIR451A-201ENST00000385059 72 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
USP3Q9Y6I4 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 snoU13.17-201ENST00000458802 104 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 RNU6-687P-201ENST00000516443 89 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 MIR8081-201ENST00000611533 95 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 SNORA8.1-201ENST00000384250 140 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 SNORA25.15-201ENST00000516487 89 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 AC012493.3-201ENST00000604494 112 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 RNA5SP245-201ENST00000364239 121 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 SNORA24B-201ENST00000384176 131 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 MIR1827-201ENST00000408549 66 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.77□□□□□ -2.13
USP3Q9Y6I4 RNU6-135P-201ENST00000516769 101 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 U6.81-201ENST00000612550 106 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 RNU1-17P-201ENST00000363022 152 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 RNA5SP190-201ENST00000365222 118 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 RNU7-13P-201ENST00000516413 62 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 MIR502-201ENST00000606349 86 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 AL136317.1-201ENST00000612653 226 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 RNU6-154P-201ENST00000384306 106 ntBASIC1.75□□□□□ -2.13
USP3Q9Y6I4 uc_338.16-201ENST00000621804 95 ntBASIC1.75□□□□□ -2.13
USP3Q9Y6I4 Y_RNA.371-201ENST00000365591 113 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 MIR520F-201ENST00000384824 87 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
USP3Q9Y6I4 RNU6-482P-201ENST00000391068 107 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.74□□□□□ -2.13
USP3Q9Y6I4 MIR3140-201ENST00000583685 90 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 MIR4769-201ENST00000584126 77 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 AL353997.5-201ENST00000618886 171 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
USP3Q9Y6I4 SNORD13-201ENST00000459299 104 ntBASIC1.73□□□□□ -2.13
USP3Q9Y6I4 RNU6-287P-201ENST00000516230 98 ntBASIC1.73□□□□□ -2.13
USP3Q9Y6I4 RNU6-752P-201ENST00000516376 102 ntBASIC1.73□□□□□ -2.13
USP3Q9Y6I4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USP3Q9Y6I4 RNA5SP403-201ENST00000363598 108 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 RNU6-1241P-201ENST00000384536 107 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 MIR154-201ENST00000385243 84 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 MIR4781-201ENST00000585250 76 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.13
USP3Q9Y6I4 Y_RNA.32-201ENST00000362589 110 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RNA5SP99-201ENST00000364020 114 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RNU6-1177P-201ENST00000391058 104 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 SNORA31.14-201ENST00000516728 116 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 MIR3675-201ENST00000583661 73 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RMST_2.1-201ENST00000617263 136 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
USP3Q9Y6I4 RNU6-649P-201ENST00000384463 107 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 MIR222-201ENST00000384992 110 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 SNORA67.5-201ENST00000391036 107 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 SNORA17.3-201ENST00000391159 129 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
USP3Q9Y6I4 MIR8053-201ENST00000613344 75 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 AL157834.3-201ENST00000615543 103 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.7□□□□□ -2.14
USP3Q9Y6I4 ZNF209P-201ENST00000593450 2304 ntBASIC1.69□□□□□ -2.14
USP3Q9Y6I4 SNORD115-24-201ENST00000363528 82 ntBASIC1.69□□□□□ -2.14
USP3Q9Y6I4 MIR2113-201ENST00000459007 91 ntBASIC1.69□□□□□ -2.14
USP3Q9Y6I4 RNU6-1126P-201ENST00000384002 107 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 FABP5P4-201ENST00000437203 171 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 RNU6-274P-201ENST00000459566 107 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 RNU6-824P-201ENST00000363724 104 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 AC002429.1-201ENST00000437672 148 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 RNU7-74P-201ENST00000459104 62 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 AC125388.1-201ENST00000459631 156 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 MIR4285-201ENST00000581001 85 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms