Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 RNU6-448P-201ENST00000517052 107 ntBASIC1.05□□□□□ -2.24
NR2E3Q9Y5X4 MIR2052-201ENST00000636055 55 ntBASIC1.05□□□□□ -2.24
NR2E3Q9Y5X4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
NR2E3Q9Y5X4 RNA5SP245-201ENST00000364239 121 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 RNU6-1131P-201ENST00000364955 107 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 RNU6-291P-201ENST00000384720 107 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 RNU1-119P-201ENST00000391122 165 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 RNU6-887P-201ENST00000410660 100 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 TRAJ51-201ENST00000504127 63 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 RNU6-162P-201ENST00000516228 103 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 Y_RNA.705-201ENST00000516862 110 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 AC025521.1-201ENST00000621624 286 ntBASIC1.04□□□□□ -2.24
NR2E3Q9Y5X4 MIR330-201ENST00000362196 94 ntBASIC1.03□□□□□ -2.24
NR2E3Q9Y5X4 Y_RNA.43-201ENST00000362670 111 ntBASIC1.03□□□□□ -2.24
NR2E3Q9Y5X4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.03□□□□□ -2.24
NR2E3Q9Y5X4 SNORD58A-201ENST00000383875 65 ntBASIC1.03□□□□□ -2.24
NR2E3Q9Y5X4 RNY4P30-201ENST00000410216 95 ntBASIC1.03□□□□□ -2.24
NR2E3Q9Y5X4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.03□□□□□ -2.24
NR2E3Q9Y5X4 AC138907.6-201ENST00000568401 126 ntBASIC1.03□□□□□ -2.24
NR2E3Q9Y5X4 RNU6-1255P-201ENST00000363434 112 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 Y_RNA.190-201ENST00000363964 101 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 Y_RNA.369-201ENST00000365568 117 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 RNU6-972P-201ENST00000391208 107 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 AP003327.1-201ENST00000529684 127 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 AL513043.2-201ENST00000573941 143 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.02□□□□□ -2.25
NR2E3Q9Y5X4 SNORD36A-201ENST00000362874 73 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 RNU6-35P-201ENST00000384530 107 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 MIR516A2-201ENST00000384888 90 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 MIR516A1-201ENST00000385033 90 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 MIR520H-201ENST00000385126 88 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 SNORD63B-201ENST00000411005 70 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 AC092628.1-201ENST00000436250 252 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 MIR4698-201ENST00000577795 80 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 uc_338.16-201ENST00000621804 95 ntBASIC1.01□□□□□ -2.25
NR2E3Q9Y5X4 Y_RNA.57-201ENST00000362806 113 ntBASIC1□□□□□ -2.25
NR2E3Q9Y5X4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1□□□□□ -2.25
NR2E3Q9Y5X4 MIR519A1-201ENST00000385257 85 ntBASIC1□□□□□ -2.25
NR2E3Q9Y5X4 Y_RNA.32-201ENST00000362589 110 ntBASIC0.99□□□□□ -2.25
NR2E3Q9Y5X4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
NR2E3Q9Y5X4 RNU6-844P-201ENST00000517175 102 ntBASIC0.99□□□□□ -2.25
NR2E3Q9Y5X4 AL353765.1-201ENST00000605514 183 ntBASIC0.99□□□□□ -2.25
NR2E3Q9Y5X4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
NR2E3Q9Y5X4 MIR101-2-201ENST00000362195 79 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 RNU6-1125P-201ENST00000363601 107 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 RNU6-480P-201ENST00000384332 107 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 RNU6-535P-201ENST00000384722 107 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 SNORD99-201ENST00000408612 74 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 AC002350.1-201ENST00000490759 375 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 SNORA31.14-201ENST00000516728 116 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 MIR548H5-201ENST00000580314 60 ntBASIC0.98□□□□□ -2.25
NR2E3Q9Y5X4 Y_RNA.96-201ENST00000363092 109 ntBASIC0.97□□□□□ -2.25
NR2E3Q9Y5X4 MIR635-201ENST00000384830 98 ntBASIC0.97□□□□□ -2.25
NR2E3Q9Y5X4 RNU7-195P-201ENST00000458793 62 ntBASIC0.97□□□□□ -2.25
NR2E3Q9Y5X4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.97□□□□□ -2.25
NR2E3Q9Y5X4 SNORD116-10-201ENST00000363791 102 ntBASIC0.96□□□□□ -2.26
NR2E3Q9Y5X4 MIR608-201ENST00000384820 100 ntBASIC0.96□□□□□ -2.26
NR2E3Q9Y5X4 MIR573-201ENST00000384964 99 ntBASIC0.96□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-1254P-201ENST00000391266 104 ntBASIC0.96□□□□□ -2.26
NR2E3Q9Y5X4 AC244505.6-201ENST00000452829 130 ntBASIC0.96□□□□□ -2.26
NR2E3Q9Y5X4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.96□□□□□ -2.26
NR2E3Q9Y5X4 Y_RNA.220-201ENST00000364244 109 ntBASIC0.95□□□□□ -2.26
NR2E3Q9Y5X4 MIR1197-201ENST00000408818 88 ntBASIC0.95□□□□□ -2.26
NR2E3Q9Y5X4 RNU7-85P-201ENST00000458851 63 ntBASIC0.95□□□□□ -2.26
NR2E3Q9Y5X4 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-1260P-201ENST00000362944 107 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 AC244098.3-201ENST00000424803 96 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 snoU13.11-201ENST00000459219 104 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 AC026421.1-201ENST00000519101 163 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 AC011195.1-201ENST00000578177 177 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 RNU7-10P-201ENST00000607194 63 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 MIR6835-201ENST00000621552 64 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 MIR4679-1-201ENST00000637619 75 ntBASIC0.94□□□□□ -2.26
NR2E3Q9Y5X4 AL606490.4-201ENST00000423117 127 ntBASIC0.93□□□□□ -2.26
NR2E3Q9Y5X4 AC097635.1-201ENST00000450678 155 ntBASIC0.93□□□□□ -2.26
NR2E3Q9Y5X4 Y_RNA.648-201ENST00000459455 110 ntBASIC0.93□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-75P-201ENST00000515944 104 ntBASIC0.93□□□□□ -2.26
NR2E3Q9Y5X4 ACA64.5-201ENST00000516207 127 ntBASIC0.93□□□□□ -2.26
NR2E3Q9Y5X4 AC138869.1-201ENST00000568623 124 ntBASIC0.93□□□□□ -2.26
NR2E3Q9Y5X4 MIR4711-201ENST00000578274 70 ntBASIC0.93□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-294P-201ENST00000364999 102 ntBASIC0.92□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-497P-201ENST00000365316 104 ntBASIC0.92□□□□□ -2.26
NR2E3Q9Y5X4 Y_RNA.809-201ENST00000516058 95 ntBASIC0.92□□□□□ -2.26
NR2E3Q9Y5X4 MIR3612-201ENST00000579753 87 ntBASIC0.92□□□□□ -2.26
NR2E3Q9Y5X4 RNA5SP347-201ENST00000362445 119 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-957P-201ENST00000363652 99 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-219P-201ENST00000364728 107 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 MIR508-201ENST00000384857 115 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 MIR644A-201ENST00000385262 94 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 Y_RNA.593-201ENST00000410292 98 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 RNA5SP193-201ENST00000410353 107 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 AL161932.1-201ENST00000437408 146 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 SNORD4B-201ENST00000459083 72 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 RNU6-1265P-201ENST00000516342 103 ntBASIC0.91□□□□□ -2.26
NR2E3Q9Y5X4 Y_RNA.174-201ENST00000363781 105 ntBASIC0.9□□□□□ -2.27
NR2E3Q9Y5X4 RNU4-45P-201ENST00000365469 141 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 166.5 ms