Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 RNA5SP489-201ENST00000410986 109 ntBASIC3.53□□□□□ -1.84
NCBP3Q53F19 AC025033.1-201ENST00000463883 194 ntBASIC3.53□□□□□ -1.84
NCBP3Q53F19 RN7SKP88-201ENST00000516847 250 ntBASIC3.53□□□□□ -1.84
NCBP3Q53F19 AL359821.1-201ENST00000605519 182 ntBASIC3.53□□□□□ -1.84
NCBP3Q53F19 7SK.8-201ENST00000612110 250 ntBASIC3.53□□□□□ -1.84
NCBP3Q53F19 7SK.11-201ENST00000615477 250 ntBASIC3.53□□□□□ -1.84
NCBP3Q53F19 7SK.13-201ENST00000622040 250 ntBASIC3.53□□□□□ -1.84
NCBP3Q53F19 MIR449A-201ENST00000362113 91 ntBASIC3.52□□□□□ -1.85
NCBP3Q53F19 MIR630-201ENST00000384957 97 ntBASIC3.52□□□□□ -1.85
NCBP3Q53F19 MIR3124-201ENST00000582636 67 ntBASIC3.52□□□□□ -1.85
NCBP3Q53F19 RNU6-1312P-201ENST00000362425 108 ntBASIC3.51□□□□□ -1.85
NCBP3Q53F19 MIR4672-201ENST00000583126 81 ntBASIC3.51□□□□□ -1.85
NCBP3Q53F19 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
NCBP3Q53F19 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.5□□□□□ -1.85
NCBP3Q53F19 MIR1-1-201ENST00000362147 71 ntBASIC3.5□□□□□ -1.85
NCBP3Q53F19 MIR3198-2-201ENST00000577868 80 ntBASIC3.5□□□□□ -1.85
NCBP3Q53F19 AL136317.1-201ENST00000612653 226 ntBASIC3.5□□□□□ -1.85
NCBP3Q53F19 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
NCBP3Q53F19 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NCBP3Q53F19 RNU7-21P-201ENST00000459430 62 ntBASIC3.49□□□□□ -1.85
NCBP3Q53F19 MIR4319-201ENST00000577285 85 ntBASIC3.48□□□□□ -1.85
NCBP3Q53F19 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
NCBP3Q53F19 RNU6-301P-201ENST00000384277 107 ntBASIC3.47□□□□□ -1.85
NCBP3Q53F19 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC3.46□□□□□ -1.86
NCBP3Q53F19 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.46□□□□□ -1.86
NCBP3Q53F19 AL157398.1-201ENST00000452981 186 ntBASIC3.46□□□□□ -1.86
NCBP3Q53F19 RNU7-74P-201ENST00000459104 62 ntBASIC3.46□□□□□ -1.86
NCBP3Q53F19 AC062016.1-201ENST00000355719 319 ntBASIC3.45□□□□□ -1.86
NCBP3Q53F19 AC018659.1-201ENST00000551083 169 ntBASIC3.45□□□□□ -1.86
NCBP3Q53F19 MIR5092-201ENST00000583139 88 ntBASIC3.45□□□□□ -1.86
NCBP3Q53F19 RNU6-1162P-201ENST00000384443 104 ntBASIC3.44□□□□□ -1.86
NCBP3Q53F19 RNU6-859P-201ENST00000362728 107 ntBASIC3.43□□□□□ -1.86
NCBP3Q53F19 RNU4-88P-201ENST00000411220 86 ntBASIC3.43□□□□□ -1.86
NCBP3Q53F19 MIR4460-201ENST00000577862 86 ntBASIC3.43□□□□□ -1.86
NCBP3Q53F19 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
NCBP3Q53F19 SNORA80D-201ENST00000384488 135 ntBASIC3.42□□□□□ -1.86
NCBP3Q53F19 RNU7-90P-201ENST00000459216 62 ntBASIC3.42□□□□□ -1.86
NCBP3Q53F19 AC108210.2-201ENST00000503681 201 ntBASIC3.42□□□□□ -1.86
NCBP3Q53F19 RNU1-40P-201ENST00000516816 164 ntBASIC3.42□□□□□ -1.86
NCBP3Q53F19 RNU1-97P-201ENST00000516872 164 ntBASIC3.42□□□□□ -1.86
NCBP3Q53F19 SNORD53-201ENST00000579969 78 ntBASIC3.42□□□□□ -1.86
NCBP3Q53F19 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.42□□□□□ -1.86
NCBP3Q53F19 MT-TY-201ENST00000387409 66 ntBASIC3.41□□□□□ -1.86
NCBP3Q53F19 SNORD109B-201ENST00000458961 67 ntBASIC3.41□□□□□ -1.86
NCBP3Q53F19 SNORD109A-201ENST00000459128 67 ntBASIC3.41□□□□□ -1.86
NCBP3Q53F19 RN7SL429P-201ENST00000479090 223 ntBASIC3.41□□□□□ -1.86
NCBP3Q53F19 RN7SL489P-201ENST00000486185 223 ntBASIC3.41□□□□□ -1.86
NCBP3Q53F19 RN7SL327P-201ENST00000488659 223 ntBASIC3.41□□□□□ -1.86
NCBP3Q53F19 RN7SL853P-201ENST00000617250 223 ntBASIC3.41□□□□□ -1.86
NCBP3Q53F19 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
NCBP3Q53F19 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
NCBP3Q53F19 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.4□□□□□ -1.87
NCBP3Q53F19 RNA5SP456-201ENST00000364002 114 ntBASIC3.4□□□□□ -1.87
NCBP3Q53F19 MIR644A-201ENST00000385262 94 ntBASIC3.4□□□□□ -1.87
NCBP3Q53F19 RNU6-910P-201ENST00000390844 107 ntBASIC3.4□□□□□ -1.87
NCBP3Q53F19 RNA5SP184-201ENST00000411071 108 ntBASIC3.4□□□□□ -1.87
NCBP3Q53F19 snoU13.13-201ENST00000458842 104 ntBASIC3.4□□□□□ -1.87
NCBP3Q53F19 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.4□□□□□ -1.87
NCBP3Q53F19 MIR3162-201ENST00000581818 82 ntBASIC3.4□□□□□ -1.87
NCBP3Q53F19 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.87
NCBP3Q53F19 MIR196B-201ENST00000384852 84 ntBASIC3.39□□□□□ -1.87
NCBP3Q53F19 MIR27B-201ENST00000385129 97 ntBASIC3.39□□□□□ -1.87
NCBP3Q53F19 AC008834.1-201ENST00000511612 175 ntBASIC3.39□□□□□ -1.87
NCBP3Q53F19 RNU6-902P-201ENST00000517212 91 ntBASIC3.39□□□□□ -1.87
NCBP3Q53F19 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
NCBP3Q53F19 MIR548L-201ENST00000408303 86 ntBASIC3.38□□□□□ -1.87
NCBP3Q53F19 MIR4435-1-201ENST00000582552 80 ntBASIC3.38□□□□□ -1.87
NCBP3Q53F19 SNORD113-2-201ENST00000391082 72 ntBASIC3.37□□□□□ -1.87
NCBP3Q53F19 RNU4ATAC4P-201ENST00000516307 126 ntBASIC3.37□□□□□ -1.87
NCBP3Q53F19 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NCBP3Q53F19 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NCBP3Q53F19 Y_RNA.250-201ENST00000364542 110 ntBASIC3.36□□□□□ -1.87
NCBP3Q53F19 MIR521-2-201ENST00000384818 87 ntBASIC3.36□□□□□ -1.87
NCBP3Q53F19 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC3.36□□□□□ -1.87
NCBP3Q53F19 MIR548AD-201ENST00000584780 82 ntBASIC3.36□□□□□ -1.87
NCBP3Q53F19 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
NCBP3Q53F19 MIR517B-201ENST00000385102 67 ntBASIC3.35□□□□□ -1.87
NCBP3Q53F19 RNA5SP402-201ENST00000517148 110 ntBASIC3.35□□□□□ -1.87
NCBP3Q53F19 MIR3670-2-201ENST00000582974 65 ntBASIC3.35□□□□□ -1.87
NCBP3Q53F19 MIR3670-1-201ENST00000584160 65 ntBASIC3.35□□□□□ -1.87
NCBP3Q53F19 MIR3670-3-201ENST00000584855 65 ntBASIC3.35□□□□□ -1.87
NCBP3Q53F19 MIR3670-4-201ENST00000612260 65 ntBASIC3.35□□□□□ -1.87
NCBP3Q53F19 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NCBP3Q53F19 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
NCBP3Q53F19 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NCBP3Q53F19 AC244669.1-204ENST00000621564 178 ntBASIC3.34□□□□□ -1.87
NCBP3Q53F19 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
NCBP3Q53F19 SNORA7.1-201ENST00000363750 139 ntBASIC3.33□□□□□ -1.88
NCBP3Q53F19 SNORD114-4-201ENST00000363962 75 ntBASIC3.33□□□□□ -1.88
NCBP3Q53F19 Y_RNA.379-201ENST00000365653 102 ntBASIC3.33□□□□□ -1.88
NCBP3Q53F19 RMST_2.1-201ENST00000617263 136 ntBASIC3.33□□□□□ -1.88
NCBP3Q53F19 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NCBP3Q53F19 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NCBP3Q53F19 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
NCBP3Q53F19 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
NCBP3Q53F19 SNORD41.1-201ENST00000391000 69 ntBASIC3.32□□□□□ -1.88
NCBP3Q53F19 RNA5SP508-201ENST00000411327 119 ntBASIC3.32□□□□□ -1.88
NCBP3Q53F19 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.32□□□□□ -1.88
NCBP3Q53F19 MIR221-201ENST00000385135 110 ntBASIC3.31□□□□□ -1.88
NCBP3Q53F19 RNA5SP68-201ENST00000363885 119 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms