Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR521-2-201ENST00000384818 87 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 MIR4696-201ENST00000581431 70 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 MIR4744-201ENST00000581563 82 ntBASIC-1.24□□□□□ -2.61
CHD9Q3L8U1 AC113618.1-201ENST00000416747 285 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 AC107399.1-201ENST00000451226 265 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 RNA5SP106-201ENST00000517274 100 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 AC084781.2-201ENST00000615568 161 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.380-201ENST00000365663 111 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 RNU4-88P-201ENST00000411220 86 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 RNU6-561P-201ENST00000516222 102 ntBASIC-1.25□□□□□ -2.61
CHD9Q3L8U1 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.233-201ENST00000364407 101 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 SNORA75-201ENST00000384158 137 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 MTATP6P29-201ENST00000415057 132 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 SNRPGP8-201ENST00000454064 226 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 SNORD2.1-201ENST00000458762 69 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 RNU6-103P-201ENST00000363686 107 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.199-201ENST00000364014 102 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 RNU6-1042P-201ENST00000384204 107 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 AF228730.3-201ENST00000436691 102 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 RNU2-4P-201ENST00000606190 192 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 PISRT1.1-201ENST00000616930 107 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 RNU4-24P-201ENST00000364565 139 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 RNU6-1109P-201ENST00000391187 107 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 FGF7P6-202ENST00000451282 293 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 RNU6-65P-201ENST00000516332 98 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 U7.5-201ENST00000517224 61 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 MIR6509-201ENST00000614603 85 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 MIR6888-201ENST00000621977 67 ntBASIC-1.26□□□□□ -2.61
CHD9Q3L8U1 RNA5SP26-201ENST00000362406 119 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 RNU6-358P-201ENST00000516564 75 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 MIR203A-201ENST00000384836 110 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.592-201ENST00000410274 109 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 RNU6-584P-201ENST00000410350 95 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 RNU4-43P-201ENST00000410628 137 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 AC113139.1-201ENST00000605049 239 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 AL606534.2-204ENST00000635008 178 ntBASIC-1.27□□□□□ -2.61
CHD9Q3L8U1 RNU6-101P-201ENST00000410323 104 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 RNU4-69P-201ENST00000410677 143 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.622-201ENST00000411091 108 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 RNU7-30P-201ENST00000516835 62 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 MIR548AM-201ENST00000584298 74 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 RNU6-957P-201ENST00000363652 99 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 DEFB108C-201ENST00000400154 252 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 AC096644.2-201ENST00000429278 159 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 AC099799.1-201ENST00000439809 192 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 AC082651.2-201ENST00000496833 166 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 RNU6-507P-201ENST00000516045 100 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 SNORA20.3-201ENST00000516880 132 ntBASIC-1.28□□□□□ -2.61
CHD9Q3L8U1 SNORA25.1-201ENST00000362326 128 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 SNORD113-8-201ENST00000363497 74 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 RNU7-169P-201ENST00000459456 61 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 CYP3A54P-201ENST00000566950 75 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AC006362.1-201ENST00000567392 174 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 MIR5701-3-201ENST00000578890 82 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 MIR5701-1-201ENST00000585138 82 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AC037487.3-201ENST00000606668 112 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 MIR5701-2-201ENST00000615634 82 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AC107308.1-201ENST00000615897 301 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AC022079.1-201ENST00000621546 602 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 UBE2WP1-201ENST00000362030 340 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.80-201ENST00000362996 102 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 RNU6-483P-201ENST00000384088 108 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.485-201ENST00000384395 102 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AC119751.7-201ENST00000600494 245 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 MIR6739-201ENST00000622461 75 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 SNORA63.2-201ENST00000362603 126 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 RNU6-309P-201ENST00000364573 106 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 RNU6-1119P-201ENST00000384349 108 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 SNORD115-46-201ENST00000390982 71 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AL445567.1-201ENST00000439121 144 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.721-201ENST00000517207 102 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AC090574.1-201ENST00000623186 233 ntBASIC-1.29□□□□□ -2.62
CHD9Q3L8U1 AC138393.2-201ENST00000414742 246 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 MIR3611-201ENST00000584484 83 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 AC025521.1-201ENST00000621624 286 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 AC021753.1-201ENST00000635724 168 ntBASIC-1.3□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms