Protein–RNA interactions for Protein: P49754

VPS41, Vacuolar protein sorting-associated protein 41 homolog, humanhuman

Predictions only

Length 854 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41P49754 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.66□□□□□ -2.3
VPS41P49754 MTATP8P2-201ENST00000435212 202 ntBASIC0.66□□□□□ -2.3
VPS41P49754 RPS29P1-201ENST00000465274 159 ntBASIC0.66□□□□□ -2.3
VPS41P49754 RNU6-1265P-201ENST00000516342 103 ntBASIC0.66□□□□□ -2.3
VPS41P49754 AL513043.2-201ENST00000573941 143 ntBASIC0.66□□□□□ -2.3
VPS41P49754 AL078603.1-201ENST00000603824 313 ntBASIC0.66□□□□□ -2.3
VPS41P49754 AC244669.1-204ENST00000621564 178 ntBASIC0.66□□□□□ -2.3
VPS41P49754 RNU7-61P-201ENST00000515897 61 ntBASIC0.65□□□□□ -2.31
VPS41P49754 Y_RNA.705-201ENST00000516862 110 ntBASIC0.65□□□□□ -2.31
VPS41P49754 SCARNA16.5-201ENST00000517114 183 ntBASIC0.65□□□□□ -2.31
VPS41P49754 Y_RNA.221-201ENST00000364248 96 ntBASIC0.64□□□□□ -2.31
VPS41P49754 Y_RNA.224-201ENST00000364308 111 ntBASIC0.64□□□□□ -2.31
VPS41P49754 RNU6-524P-201ENST00000384270 107 ntBASIC0.64□□□□□ -2.31
VPS41P49754 RNA5SP220-201ENST00000516298 104 ntBASIC0.64□□□□□ -2.31
VPS41P49754 CYP3A137P-201ENST00000562436 69 ntBASIC0.64□□□□□ -2.31
VPS41P49754 uc_338.17-201ENST00000619633 179 ntBASIC0.64□□□□□ -2.31
VPS41P49754 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
VPS41P49754 RNA5SP517-201ENST00000364724 117 ntBASIC0.63□□□□□ -2.31
VPS41P49754 RNU6-972P-201ENST00000391208 107 ntBASIC0.63□□□□□ -2.31
VPS41P49754 RNU6-887P-201ENST00000410660 100 ntBASIC0.63□□□□□ -2.31
VPS41P49754 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.63□□□□□ -2.31
VPS41P49754 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.63□□□□□ -2.31
VPS41P49754 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.63□□□□□ -2.31
VPS41P49754 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.62□□□□□ -2.31
VPS41P49754 Y_RNA.96-201ENST00000363092 109 ntBASIC0.62□□□□□ -2.31
VPS41P49754 RNU6-640P-201ENST00000363693 105 ntBASIC0.62□□□□□ -2.31
VPS41P49754 RNU6-1229P-201ENST00000364295 107 ntBASIC0.62□□□□□ -2.31
VPS41P49754 RNU6-905P-201ENST00000384434 107 ntBASIC0.62□□□□□ -2.31
VPS41P49754 Y_RNA.648-201ENST00000459455 110 ntBASIC0.62□□□□□ -2.31
VPS41P49754 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.62□□□□□ -2.31
VPS41P49754 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.62□□□□□ -2.31
VPS41P49754 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.62□□□□□ -2.31
VPS41P49754 RNU6-957P-201ENST00000363652 99 ntBASIC0.61□□□□□ -2.31
VPS41P49754 SNORD58A-201ENST00000383875 65 ntBASIC0.61□□□□□ -2.31
VPS41P49754 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
VPS41P49754 MIR1287-201ENST00000408492 90 ntBASIC0.61□□□□□ -2.31
VPS41P49754 snoU13.11-201ENST00000459219 104 ntBASIC0.61□□□□□ -2.31
VPS41P49754 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.61□□□□□ -2.31
VPS41P49754 MIR6788-201ENST00000618842 66 ntBASIC0.61□□□□□ -2.31
VPS41P49754 MIR2052-201ENST00000636055 55 ntBASIC0.61□□□□□ -2.31
VPS41P49754 RNU6-726P-201ENST00000364680 107 ntBASIC0.6□□□□□ -2.31
VPS41P49754 SNORA8.2-201ENST00000384372 139 ntBASIC0.6□□□□□ -2.31
VPS41P49754 RNA5SP89-201ENST00000410300 108 ntBASIC0.6□□□□□ -2.31
VPS41P49754 AL161932.1-201ENST00000437408 146 ntBASIC0.6□□□□□ -2.31
VPS41P49754 RNU6-168P-201ENST00000516189 101 ntBASIC0.6□□□□□ -2.31
VPS41P49754 SNORA40.13-201ENST00000516379 120 ntBASIC0.6□□□□□ -2.31
VPS41P49754 RNA5SP268-201ENST00000516828 124 ntBASIC0.6□□□□□ -2.31
VPS41P49754 MIR151B-201ENST00000584249 96 ntBASIC0.6□□□□□ -2.31
VPS41P49754 U7.3-201ENST00000616123 62 ntBASIC0.6□□□□□ -2.31
VPS41P49754 AC092634.7-201ENST00000621022 103 ntBASIC0.6□□□□□ -2.31
VPS41P49754 TRDV1-202ENST00000621643 102 ntBASIC0.6□□□□□ -2.31
VPS41P49754 RNU6-42P-201ENST00000384165 107 ntBASIC0.59□□□□□ -2.31
VPS41P49754 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.59□□□□□ -2.31
VPS41P49754 RNU7-85P-201ENST00000458851 63 ntBASIC0.59□□□□□ -2.31
VPS41P49754 RNU7-104P-201ENST00000459398 79 ntBASIC0.59□□□□□ -2.31
VPS41P49754 RNU4-54P-201ENST00000516428 129 ntBASIC0.59□□□□□ -2.31
VPS41P49754 MTRNR2L2-201ENST00000604882 87 ntBASIC0.59□□□□□ -2.31
VPS41P49754 MIR7107-201ENST00000611489 80 ntBASIC0.59□□□□□ -2.31
VPS41P49754 SNORD118-201ENST00000363593 134 ntBASIC0.58□□□□□ -2.32
VPS41P49754 Y_RNA.283-201ENST00000364798 112 ntBASIC0.58□□□□□ -2.32
VPS41P49754 Y_RNA.290-201ENST00000364879 114 ntBASIC0.58□□□□□ -2.32
VPS41P49754 RNU6-945P-201ENST00000383947 107 ntBASIC0.58□□□□□ -2.32
VPS41P49754 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
VPS41P49754 SNORD41.1-201ENST00000391000 69 ntBASIC0.58□□□□□ -2.32
VPS41P49754 MIR548J-201ENST00000408833 112 ntBASIC0.58□□□□□ -2.32
VPS41P49754 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.58□□□□□ -2.32
VPS41P49754 RNU6-75P-201ENST00000515944 104 ntBASIC0.58□□□□□ -2.32
VPS41P49754 RNA5SP121-201ENST00000516537 101 ntBASIC0.58□□□□□ -2.32
VPS41P49754 RNU6-1223P-201ENST00000517124 104 ntBASIC0.58□□□□□ -2.32
VPS41P49754 MIR3920-201ENST00000581751 86 ntBASIC0.58□□□□□ -2.32
VPS41P49754 MIR6734-201ENST00000621166 68 ntBASIC0.58□□□□□ -2.32
VPS41P49754 AC067863.3-201ENST00000624172 122 ntBASIC0.58□□□□□ -2.32
VPS41P49754 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
VPS41P49754 SNORD116-10-201ENST00000363791 102 ntBASIC0.57□□□□□ -2.32
VPS41P49754 Y_RNA.226-201ENST00000364337 114 ntBASIC0.57□□□□□ -2.32
VPS41P49754 SNORA40.8-201ENST00000411034 126 ntBASIC0.57□□□□□ -2.32
VPS41P49754 RNA5SP247-201ENST00000411181 105 ntBASIC0.57□□□□□ -2.32
VPS41P49754 AL157398.1-201ENST00000452981 186 ntBASIC0.57□□□□□ -2.32
VPS41P49754 Y_RNA.677-201ENST00000516401 85 ntBASIC0.57□□□□□ -2.32
VPS41P49754 AC018659.1-201ENST00000551083 169 ntBASIC0.57□□□□□ -2.32
VPS41P49754 MIR5000-201ENST00000577717 103 ntBASIC0.57□□□□□ -2.32
VPS41P49754 U6.100-201ENST00000636230 99 ntBASIC0.57□□□□□ -2.32
VPS41P49754 RNU6-466P-201ENST00000391224 103 ntBASIC0.56□□□□□ -2.32
VPS41P49754 RNA5SP227-201ENST00000516184 113 ntBASIC0.56□□□□□ -2.32
VPS41P49754 RNU6-162P-201ENST00000516228 103 ntBASIC0.56□□□□□ -2.32
VPS41P49754 RN7SKP12-201ENST00000516275 143 ntBASIC0.56□□□□□ -2.32
VPS41P49754 SNORA25.18-201ENST00000607153 114 ntBASIC0.56□□□□□ -2.32
VPS41P49754 RNU6-716P-201ENST00000365621 103 ntBASIC0.55□□□□□ -2.32
VPS41P49754 MIR488-201ENST00000365739 83 ntBASIC0.55□□□□□ -2.32
VPS41P49754 MIR518A1-201ENST00000385068 85 ntBASIC0.55□□□□□ -2.32
VPS41P49754 MIR518E-201ENST00000385252 88 ntBASIC0.55□□□□□ -2.32
VPS41P49754 RNU7-13P-201ENST00000516413 62 ntBASIC0.55□□□□□ -2.32
VPS41P49754 MIR4714-201ENST00000580728 77 ntBASIC0.55□□□□□ -2.32
VPS41P49754 Y_RNA.190-201ENST00000363964 101 ntBASIC0.54□□□□□ -2.32
VPS41P49754 AC098934.3-201ENST00000430450 190 ntBASIC0.54□□□□□ -2.32
VPS41P49754 SNORD4B-201ENST00000459083 72 ntBASIC0.54□□□□□ -2.32
VPS41P49754 MIR548AG2-201ENST00000581228 64 ntBASIC0.54□□□□□ -2.32
VPS41P49754 MALAT1.1-201ENST00000618249 95 ntBASIC0.54□□□□□ -2.32
VPS41P49754 AL162376.1-201ENST00000624117 175 ntBASIC0.54□□□□□ -2.32
VPS41P49754 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 201.2 ms