Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RNU6-106P-201ENST00000384405 107 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 SNORD116-21-201ENST00000384507 92 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 Y_RNA.601-201ENST00000410500 113 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 RNA5SP222-201ENST00000411039 105 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 RNU4-61P-201ENST00000411243 107 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 RNU6-919P-201ENST00000516731 104 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 AC068339.1-201ENST00000526965 141 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 MIR4639-201ENST00000584938 69 ntBASIC0.29□□□□□ -2.36
COL5A1P20908 SNORD38.1-201ENST00000363863 68 ntBASIC0.28□□□□□ -2.36
COL5A1P20908 RNU6-571P-201ENST00000384128 107 ntBASIC0.28□□□□□ -2.36
COL5A1P20908 RNU6-1201P-201ENST00000384227 107 ntBASIC0.28□□□□□ -2.36
COL5A1P20908 AC097635.1-201ENST00000450678 155 ntBASIC0.28□□□□□ -2.36
COL5A1P20908 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.28□□□□□ -2.36
COL5A1P20908 RNU7-161P-201ENST00000517289 62 ntBASIC0.28□□□□□ -2.36
COL5A1P20908 AC092634.7-201ENST00000621022 103 ntBASIC0.28□□□□□ -2.36
COL5A1P20908 AL035470.1-201ENST00000622571 220 ntBASIC0.28□□□□□ -2.36
COL5A1P20908 RNY3P2-201ENST00000362918 102 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 Y_RNA.342-201ENST00000365352 113 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 MIR140-201ENST00000385282 100 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU7-61P-201ENST00000515897 61 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU4-54P-201ENST00000516428 129 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 AC091304.10-201ENST00000641554 121 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 SNORA9.1-201ENST00000362412 131 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 Y_RNA.57-201ENST00000362806 113 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU6-1260P-201ENST00000362944 107 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU6-1290P-201ENST00000362957 109 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 SNORD28-201ENST00000384706 75 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU6-816P-201ENST00000390914 107 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU6-1268P-201ENST00000391214 107 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU6-1254P-201ENST00000391266 104 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU6-1239P-201ENST00000391310 107 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 RNU6-537P-201ENST00000517277 103 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 MIR3612-201ENST00000579753 87 ntBASIC0.27□□□□□ -2.37
COL5A1P20908 Y_RNA.10-201ENST00000362371 110 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-664P-201ENST00000362381 107 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 Y_RNA.247-201ENST00000364500 92 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-1126P-201ENST00000384002 107 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-44P-201ENST00000384045 107 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-679P-201ENST00000391003 106 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-1307P-201ENST00000391012 103 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-243P-201ENST00000391140 107 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-1064P-201ENST00000410626 104 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 SNORA19.1-201ENST00000410656 129 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 RNU6-850P-201ENST00000516934 103 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 MIR4694-201ENST00000578534 80 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 MIR2052-201ENST00000636055 55 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 AC073869.9-201ENST00000641610 120 ntBASIC0.26□□□□□ -2.37
COL5A1P20908 Y_RNA.98-201ENST00000363109 102 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 RNA5SP245-201ENST00000364239 121 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 Y_RNA.261-201ENST00000364631 102 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 Y_RNA.323-201ENST00000365157 109 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 Y_RNA.348-201ENST00000365403 103 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 RNY1P8-201ENST00000383970 114 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 RNU6-880P-201ENST00000384526 107 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 MIR617-201ENST00000385030 97 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 Y_RNA.596-201ENST00000410462 109 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 SNORD63B-201ENST00000411005 70 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 AC244505.6-201ENST00000452829 130 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 RNU6-863P-201ENST00000515989 104 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 RNU6-313P-201ENST00000516317 112 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 Y_RNA.818-201ENST00000618813 71 ntBASIC0.25□□□□□ -2.37
COL5A1P20908 Y_RNA.78-201ENST00000362970 110 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 Y_RNA.96-201ENST00000363092 109 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 Y_RNA.377-201ENST00000365644 108 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 Y_RNA.567-201ENST00000384736 106 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 MIR34C-201ENST00000384831 77 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 Y_RNA.677-201ENST00000516401 85 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 IGLVI-20-201ENST00000519296 130 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 MIR3678-201ENST00000578455 94 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 MIR4439-201ENST00000583746 80 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 RNU6-170P-201ENST00000362832 104 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 SNORD58A-201ENST00000383875 65 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 MIR644A-201ENST00000385262 94 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 MIR548L-201ENST00000408303 86 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 MIR548G-201ENST00000408442 89 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 RNU6-554P-201ENST00000410466 106 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 AL513043.2-201ENST00000573941 143 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 SNORA25.18-201ENST00000607153 114 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.24□□□□□ -2.37
COL5A1P20908 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.24□□□□□ -2.37
COL5A1P20908 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
COL5A1P20908 MIR103A1-201ENST00000362165 78 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 SNORD118-201ENST00000363593 134 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 RNU6-1125P-201ENST00000363601 107 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 Y_RNA.163-201ENST00000363702 113 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 Y_RNA.467-201ENST00000384297 102 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 RNU6-480P-201ENST00000384332 107 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 SNORA7.5-201ENST00000410672 110 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 RNU7-195P-201ENST00000458793 62 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 SCARNA23-201ENST00000516060 130 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 MIR4536-1-201ENST00000583537 88 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 AP001318.4-201ENST00000616637 121 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 MIR8066-201ENST00000617280 78 ntBASIC0.23□□□□□ -2.37
COL5A1P20908 MIR409-201ENST00000362237 79 ntBASIC0.22□□□□□ -2.37
COL5A1P20908 Y_RNA.423-201ENST00000384057 113 ntBASIC0.22□□□□□ -2.37
COL5A1P20908 SNORA8.2-201ENST00000384372 139 ntBASIC0.22□□□□□ -2.37
COL5A1P20908 MIR519A1-201ENST00000385257 85 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms