Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-726P-201ENST00000364680 107 ntBASIC0.39□□□□□ -2.35
MSH3P20585 RNU7-104P-201ENST00000459398 79 ntBASIC0.39□□□□□ -2.35
MSH3P20585 MIR4711-201ENST00000578274 70 ntBASIC0.39□□□□□ -2.35
MSH3P20585 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.39□□□□□ -2.35
MSH3P20585 MIRLET7D-201ENST00000362263 87 ntBASIC0.38□□□□□ -2.35
MSH3P20585 Y_RNA.78-201ENST00000362970 110 ntBASIC0.38□□□□□ -2.35
MSH3P20585 SNORD44.1-201ENST00000363202 61 ntBASIC0.38□□□□□ -2.35
MSH3P20585 Y_RNA.163-201ENST00000363702 113 ntBASIC0.38□□□□□ -2.35
MSH3P20585 RNU6-524P-201ENST00000384270 107 ntBASIC0.38□□□□□ -2.35
MSH3P20585 Y_RNA.659-201ENST00000515994 113 ntBASIC0.38□□□□□ -2.35
MSH3P20585 AC243829.6-201ENST00000612652 106 ntBASIC0.38□□□□□ -2.35
MSH3P20585 AC067863.3-201ENST00000624172 122 ntBASIC0.38□□□□□ -2.35
MSH3P20585 U2.22-201ENST00000636441 106 ntBASIC0.38□□□□□ -2.35
MSH3P20585 RNU4-36P-201ENST00000364294 144 ntBASIC0.37□□□□□ -2.35
MSH3P20585 RNU6-716P-201ENST00000365621 103 ntBASIC0.37□□□□□ -2.35
MSH3P20585 MIR489-201ENST00000384923 84 ntBASIC0.37□□□□□ -2.35
MSH3P20585 MIR216A-201ENST00000385063 110 ntBASIC0.37□□□□□ -2.35
MSH3P20585 RNU6-243P-201ENST00000391140 107 ntBASIC0.37□□□□□ -2.35
MSH3P20585 Y_RNA.601-201ENST00000410500 113 ntBASIC0.37□□□□□ -2.35
MSH3P20585 Y_RNA.629-201ENST00000411368 105 ntBASIC0.37□□□□□ -2.35
MSH3P20585 AC109327.2-201ENST00000448339 378 ntBASIC0.37□□□□□ -2.35
MSH3P20585 MIR4439-201ENST00000583746 80 ntBASIC0.37□□□□□ -2.35
MSH3P20585 Y_RNA.10-201ENST00000362371 110 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-1125P-201ENST00000363601 107 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-1244P-201ENST00000363614 108 ntBASIC0.36□□□□□ -2.35
MSH3P20585 SNORD45B-201ENST00000364617 72 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-1126P-201ENST00000384002 107 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-480P-201ENST00000384332 107 ntBASIC0.36□□□□□ -2.35
MSH3P20585 SNORD41.1-201ENST00000391000 69 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNA5SP193-201ENST00000410353 107 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU2-59P-201ENST00000410482 191 ntBASIC0.36□□□□□ -2.35
MSH3P20585 AC069271.1-201ENST00000445577 156 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-904P-201ENST00000516206 101 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-1265P-201ENST00000516342 103 ntBASIC0.36□□□□□ -2.35
MSH3P20585 Y_RNA.709-201ENST00000516952 92 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-86P-201ENST00000606534 107 ntBASIC0.36□□□□□ -2.35
MSH3P20585 RNU6-1290P-201ENST00000362957 109 ntBASIC0.35□□□□□ -2.35
MSH3P20585 Y_RNA.95-201ENST00000363079 95 ntBASIC0.35□□□□□ -2.35
MSH3P20585 RNU6-106P-201ENST00000384405 107 ntBASIC0.35□□□□□ -2.35
MSH3P20585 MIR181B2-201ENST00000385004 89 ntBASIC0.35□□□□□ -2.35
MSH3P20585 MIR1302-5-201ENST00000408164 150 ntBASIC0.35□□□□□ -2.35
MSH3P20585 RNU6-863P-201ENST00000515989 104 ntBASIC0.35□□□□□ -2.35
MSH3P20585 SNORD114-23-201ENST00000363536 72 ntBASIC0.34□□□□□ -2.36
MSH3P20585 MIR548L-201ENST00000408303 86 ntBASIC0.34□□□□□ -2.36
MSH3P20585 RNU6-554P-201ENST00000410466 106 ntBASIC0.34□□□□□ -2.36
MSH3P20585 SNORA19.1-201ENST00000410656 129 ntBASIC0.34□□□□□ -2.36
MSH3P20585 MIR3920-201ENST00000581751 86 ntBASIC0.34□□□□□ -2.36
MSH3P20585 AL162376.1-201ENST00000624117 175 ntBASIC0.34□□□□□ -2.36
MSH3P20585 AC090625.1-201ENST00000357130 210 ntBASIC0.33□□□□□ -2.36
MSH3P20585 MIR103A1-201ENST00000362165 78 ntBASIC0.33□□□□□ -2.36
MSH3P20585 Y_RNA.291-201ENST00000364886 113 ntBASIC0.33□□□□□ -2.36
MSH3P20585 RNU6-1325P-201ENST00000364905 105 ntBASIC0.33□□□□□ -2.36
MSH3P20585 VTRNA1-3-201ENST00000365645 89 ntBASIC0.33□□□□□ -2.36
MSH3P20585 RNY4P18-201ENST00000391107 89 ntBASIC0.33□□□□□ -2.36
MSH3P20585 RNU7-13P-201ENST00000516413 62 ntBASIC0.33□□□□□ -2.36
MSH3P20585 MIR548AI-201ENST00000579940 88 ntBASIC0.33□□□□□ -2.36
MSH3P20585 RN7SL793P-201ENST00000583259 296 ntBASIC0.33□□□□□ -2.36
MSH3P20585 MIR4777-201ENST00000583710 86 ntBASIC0.33□□□□□ -2.36
MSH3P20585 MIR7111-201ENST00000619751 72 ntBASIC0.33□□□□□ -2.36
MSH3P20585 Y_RNA.36-201ENST00000362602 112 ntBASIC0.32□□□□□ -2.36
MSH3P20585 RNU6-813P-201ENST00000384691 107 ntBASIC0.32□□□□□ -2.36
MSH3P20585 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.32□□□□□ -2.36
MSH3P20585 SCARNA23-201ENST00000516060 130 ntBASIC0.32□□□□□ -2.36
MSH3P20585 RNU6-795P-201ENST00000516323 103 ntBASIC0.32□□□□□ -2.36
MSH3P20585 RNU6-537P-201ENST00000517277 103 ntBASIC0.32□□□□□ -2.36
MSH3P20585 AC012531.4-201ENST00000616509 177 ntBASIC0.32□□□□□ -2.36
MSH3P20585 PVT1_3.1-201ENST00000620853 95 ntBASIC0.32□□□□□ -2.36
MSH3P20585 RNU6-957P-201ENST00000363652 99 ntBASIC0.31□□□□□ -2.36
MSH3P20585 Y_RNA.467-201ENST00000384297 102 ntBASIC0.31□□□□□ -2.36
MSH3P20585 AL161932.1-201ENST00000437408 146 ntBASIC0.31□□□□□ -2.36
MSH3P20585 MIR548Z-201ENST00000584743 97 ntBASIC0.31□□□□□ -2.36
MSH3P20585 uc_338.28-201ENST00000612082 187 ntBASIC0.31□□□□□ -2.36
MSH3P20585 MIR6755-201ENST00000619993 66 ntBASIC0.31□□□□□ -2.36
MSH3P20585 AC025521.1-201ENST00000621624 286 ntBASIC0.31□□□□□ -2.36
MSH3P20585 TRDV1-202ENST00000621643 102 ntBASIC0.31□□□□□ -2.36
MSH3P20585 RNU6-1113P-201ENST00000384348 107 ntBASIC0.3□□□□□ -2.36
MSH3P20585 MIR590-201ENST00000385008 97 ntBASIC0.3□□□□□ -2.36
MSH3P20585 RNU6-269P-201ENST00000391077 97 ntBASIC0.3□□□□□ -2.36
MSH3P20585 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.3□□□□□ -2.36
MSH3P20585 RNU6-848P-201ENST00000515948 107 ntBASIC0.3□□□□□ -2.36
MSH3P20585 RNU6-617P-201ENST00000516147 107 ntBASIC0.3□□□□□ -2.36
MSH3P20585 RNU6-473P-201ENST00000516164 107 ntBASIC0.3□□□□□ -2.36
MSH3P20585 RNU6-1049P-201ENST00000516414 107 ntBASIC0.3□□□□□ -2.36
MSH3P20585 MIR4752-201ENST00000579672 72 ntBASIC0.3□□□□□ -2.36
MSH3P20585 RNU1-29P-201ENST00000606574 126 ntBASIC0.3□□□□□ -2.36
MSH3P20585 AC010487.4-201ENST00000637027 61 ntBASIC0.3□□□□□ -2.36
MSH3P20585 RNU6-1327P-201ENST00000365302 105 ntBASIC0.29□□□□□ -2.36
MSH3P20585 SNORD115-44-201ENST00000365391 82 ntBASIC0.29□□□□□ -2.36
MSH3P20585 SNORA51.5-201ENST00000384126 131 ntBASIC0.29□□□□□ -2.36
MSH3P20585 Y_RNA.648-201ENST00000459455 110 ntBASIC0.29□□□□□ -2.36
MSH3P20585 AC108740.1-201ENST00000498629 225 ntBASIC0.29□□□□□ -2.36
MSH3P20585 AL513043.2-201ENST00000573941 143 ntBASIC0.29□□□□□ -2.36
MSH3P20585 RNU6-215P-201ENST00000365169 102 ntBASIC0.28□□□□□ -2.36
MSH3P20585 SNORD20-201ENST00000384550 80 ntBASIC0.28□□□□□ -2.36
MSH3P20585 RNY1P4-201ENST00000384595 115 ntBASIC0.28□□□□□ -2.36
MSH3P20585 RNU6-466P-201ENST00000391224 103 ntBASIC0.28□□□□□ -2.36
MSH3P20585 snoU13.11-201ENST00000459219 104 ntBASIC0.28□□□□□ -2.36
MSH3P20585 RNA5SP134-201ENST00000516492 96 ntBASIC0.28□□□□□ -2.36
MSH3P20585 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.28□□□□□ -2.36
MSH3P20585 MIR548AG2-201ENST00000581228 64 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms