Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Y_RNA.247-201ENST00000364500 92 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 SNORD115-44-201ENST00000365391 82 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 RNU6-886P-201ENST00000384319 105 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 MIR617-201ENST00000385030 97 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 snosnR66.1-201ENST00000391095 99 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 AC093423.1-201ENST00000440817 142 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 SPINT5P-201ENST00000448174 155 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 AC104692.1-201ENST00000472406 90 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.25□□□□□ -2.45
SDC1P18827 AL512310.12-203ENST00000640543 90 ntBASIC-0.25□□□□□ -2.45
SDC1P18827 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.26□□□□□ -2.45
SDC1P18827 Y_RNA.344-201ENST00000365381 112 ntBASIC-0.26□□□□□ -2.45
SDC1P18827 MIR516B1-201ENST00000385211 90 ntBASIC-0.26□□□□□ -2.45
SDC1P18827 RNU6-426P-201ENST00000516464 97 ntBASIC-0.26□□□□□ -2.45
SDC1P18827 MIR4473-201ENST00000583731 91 ntBASIC-0.26□□□□□ -2.45
SDC1P18827 MIR1295B-201ENST00000636144 60 ntBASIC-0.26□□□□□ -2.45
SDC1P18827 RNU6-235P-201ENST00000362644 107 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 SNORD36A-201ENST00000362874 73 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 SNORD38.1-201ENST00000363863 68 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 MIR548G-201ENST00000408442 89 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 AL161932.1-201ENST00000437408 146 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 MIR2113-201ENST00000459007 91 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 CR383656.4-201ENST00000546909 122 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 TRDV1-202ENST00000621643 102 ntBASIC-0.27□□□□□ -2.45
SDC1P18827 SNORA51.5-201ENST00000384126 131 ntBASIC-0.28□□□□□ -2.45
SDC1P18827 MIR106A-201ENST00000384870 81 ntBASIC-0.28□□□□□ -2.45
SDC1P18827 RNU6-243P-201ENST00000391140 107 ntBASIC-0.28□□□□□ -2.45
SDC1P18827 AC025166.1-201ENST00000612411 163 ntBASIC-0.28□□□□□ -2.45
SDC1P18827 AC069503.3-201ENST00000618674 145 ntBASIC-0.28□□□□□ -2.45
SDC1P18827 U6.100-201ENST00000636230 99 ntBASIC-0.28□□□□□ -2.45
SDC1P18827 MIR148A-201ENST00000362215 68 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 SNORD58C-201ENST00000365223 64 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 RNU6-409P-201ENST00000384114 104 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 RNU6-287P-201ENST00000516230 98 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 RNU6-90P-201ENST00000606352 106 ntBASIC-0.29□□□□□ -2.46
SDC1P18827 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.3□□□□□ -2.46
SDC1P18827 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.3□□□□□ -2.46
SDC1P18827 YWHAEP2-201ENST00000580066 112 ntBASIC-0.3□□□□□ -2.46
SDC1P18827 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-0.3□□□□□ -2.46
SDC1P18827 RNY4P6-201ENST00000363667 96 ntBASIC-0.31□□□□□ -2.46
SDC1P18827 RNU6-46P-201ENST00000383860 107 ntBASIC-0.31□□□□□ -2.46
SDC1P18827 Y_RNA.507-201ENST00000384500 99 ntBASIC-0.31□□□□□ -2.46
SDC1P18827 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.31□□□□□ -2.46
SDC1P18827 MIR4460-201ENST00000577862 86 ntBASIC-0.31□□□□□ -2.46
SDC1P18827 AL670379.3-201ENST00000605040 251 ntBASIC-0.31□□□□□ -2.46
SDC1P18827 RN7SL660P-201ENST00000614852 299 ntBASIC-0.31□□□□□ -2.46
SDC1P18827 MTND5P18-201ENST00000445624 1801 ntBASIC-0.31□□□□□ -2.46
SDC1P18827 SNORA18.1-201ENST00000363418 128 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 RNU6-957P-201ENST00000363652 99 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 RNU6-816P-201ENST00000390914 107 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 MTND4LP9-201ENST00000427694 174 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 AC109327.2-201ENST00000448339 378 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 SNORD4A-201ENST00000459174 72 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 RNU7-188P-201ENST00000517063 64 ntBASIC-0.32□□□□□ -2.46
SDC1P18827 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.33□□□□□ -2.46
SDC1P18827 SNORD114-12-201ENST00000365400 75 ntBASIC-0.33□□□□□ -2.46
SDC1P18827 MIR548AE1-201ENST00000583292 70 ntBASIC-0.33□□□□□ -2.46
SDC1P18827 AL442128.1-201ENST00000615151 90 ntBASIC-0.33□□□□□ -2.46
SDC1P18827 RNA5SP257-201ENST00000363023 116 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 MIR181B2-201ENST00000385004 89 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 uc_338.10-201ENST00000621872 182 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 AL162726.3-218ENST00000636401 95 ntBASIC-0.34□□□□□ -2.46
SDC1P18827 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.35□□□□□ -2.47
SDC1P18827 MIR214-201ENST00000385214 110 ntBASIC-0.35□□□□□ -2.47
SDC1P18827 MT-TY-201ENST00000387409 66 ntBASIC-0.35□□□□□ -2.47
SDC1P18827 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.35□□□□□ -2.47
SDC1P18827 RNU6-772P-201ENST00000516042 105 ntBASIC-0.35□□□□□ -2.47
SDC1P18827 RNU7-200P-201ENST00000516105 62 ntBASIC-0.35□□□□□ -2.47
SDC1P18827 AC090425.1-201ENST00000610007 140 ntBASIC-0.35□□□□□ -2.47
SDC1P18827 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.35□□□□□ -2.47
SDC1P18827 SNORD49B-201ENST00000365172 72 ntBASIC-0.36□□□□□ -2.47
SDC1P18827 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.36□□□□□ -2.47
SDC1P18827 U8.6-201ENST00000364939 135 ntBASIC-0.37□□□□□ -2.47
SDC1P18827 MIR329-2-201ENST00000385029 84 ntBASIC-0.37□□□□□ -2.47
SDC1P18827 MIR1912-201ENST00000410389 80 ntBASIC-0.37□□□□□ -2.47
SDC1P18827 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.37□□□□□ -2.47
SDC1P18827 MIR6507-201ENST00000613630 70 ntBASIC-0.37□□□□□ -2.47
SDC1P18827 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 SNORA40-201ENST00000388090 126 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 RNU6-466P-201ENST00000391224 103 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 RNU6-257P-201ENST00000410238 98 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 AC244250.2-201ENST00000418731 148 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 snoU13.11-201ENST00000459219 104 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.38□□□□□ -2.47
SDC1P18827 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.38□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 186.9 ms