Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU6-979P-201ENST00000383896 107 ntBASIC0.86□□□□□ -2.27
LDB3O75112 RNU6-787P-201ENST00000384032 107 ntBASIC0.86□□□□□ -2.27
LDB3O75112 RNU6-535P-201ENST00000384722 107 ntBASIC0.86□□□□□ -2.27
LDB3O75112 RNU6-1254P-201ENST00000391266 104 ntBASIC0.86□□□□□ -2.27
LDB3O75112 MIR1276-201ENST00000408707 83 ntBASIC0.86□□□□□ -2.27
LDB3O75112 RNA5SP247-201ENST00000411181 105 ntBASIC0.86□□□□□ -2.27
LDB3O75112 MIR548BB-201ENST00000626714 66 ntBASIC0.86□□□□□ -2.27
LDB3O75112 RNU6-633P-201ENST00000362612 103 ntBASIC0.85□□□□□ -2.27
LDB3O75112 RNU6-509P-201ENST00000363519 107 ntBASIC0.85□□□□□ -2.27
LDB3O75112 Y_RNA.283-201ENST00000364798 112 ntBASIC0.85□□□□□ -2.27
LDB3O75112 RNU6-132P-201ENST00000383863 107 ntBASIC0.85□□□□□ -2.27
LDB3O75112 RNU6-524P-201ENST00000384270 107 ntBASIC0.85□□□□□ -2.27
LDB3O75112 MIR635-201ENST00000384830 98 ntBASIC0.85□□□□□ -2.27
LDB3O75112 RNU6-519P-201ENST00000410590 108 ntBASIC0.85□□□□□ -2.27
LDB3O75112 Y_RNA.611-201ENST00000410682 108 ntBASIC0.85□□□□□ -2.27
LDB3O75112 SNORA31.14-201ENST00000516728 116 ntBASIC0.85□□□□□ -2.27
LDB3O75112 MIR4698-201ENST00000577795 80 ntBASIC0.85□□□□□ -2.27
LDB3O75112 MIR5588-201ENST00000581890 63 ntBASIC0.85□□□□□ -2.27
LDB3O75112 AC025627.3-201ENST00000582078 182 ntBASIC0.85□□□□□ -2.27
LDB3O75112 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.85□□□□□ -2.27
LDB3O75112 IGLL4P-201ENST00000614590 133 ntBASIC0.85□□□□□ -2.27
LDB3O75112 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.85□□□□□ -2.27
LDB3O75112 RNU4-32P-201ENST00000363404 141 ntBASIC0.84□□□□□ -2.27
LDB3O75112 RNU6-820P-201ENST00000384273 107 ntBASIC0.84□□□□□ -2.27
LDB3O75112 MIR532-201ENST00000385025 91 ntBASIC0.84□□□□□ -2.27
LDB3O75112 MIR520H-201ENST00000385126 88 ntBASIC0.84□□□□□ -2.27
LDB3O75112 RNA5SP292-201ENST00000390974 118 ntBASIC0.84□□□□□ -2.27
LDB3O75112 RNU1-119P-201ENST00000391122 165 ntBASIC0.84□□□□□ -2.27
LDB3O75112 RNU6-243P-201ENST00000391140 107 ntBASIC0.84□□□□□ -2.27
LDB3O75112 SNORD90-201ENST00000391145 111 ntBASIC0.84□□□□□ -2.27
LDB3O75112 MIR1287-201ENST00000408492 90 ntBASIC0.84□□□□□ -2.27
LDB3O75112 Y_RNA.648-201ENST00000459455 110 ntBASIC0.84□□□□□ -2.27
LDB3O75112 RNA5SP255-201ENST00000516370 107 ntBASIC0.84□□□□□ -2.27
LDB3O75112 MIR3973-201ENST00000579824 107 ntBASIC0.84□□□□□ -2.27
LDB3O75112 uc_338.16-201ENST00000621804 95 ntBASIC0.84□□□□□ -2.27
LDB3O75112 AC006160.2-201ENST00000637708 154 ntBASIC0.84□□□□□ -2.27
LDB3O75112 Y_RNA.226-201ENST00000364337 114 ntBASIC0.83□□□□□ -2.28
LDB3O75112 Y_RNA.809-201ENST00000516058 95 ntBASIC0.83□□□□□ -2.28
LDB3O75112 MIR548H5-201ENST00000580314 60 ntBASIC0.83□□□□□ -2.28
LDB3O75112 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.83□□□□□ -2.28
LDB3O75112 MIRLET7F1-201ENST00000362202 87 ntBASIC0.82□□□□□ -2.28
LDB3O75112 RNU6-228P-201ENST00000362700 106 ntBASIC0.82□□□□□ -2.28
LDB3O75112 MIR599-201ENST00000385069 95 ntBASIC0.82□□□□□ -2.28
LDB3O75112 MIR519A1-201ENST00000385257 85 ntBASIC0.82□□□□□ -2.28
LDB3O75112 MIR4452-201ENST00000583004 71 ntBASIC0.82□□□□□ -2.28
LDB3O75112 U6.100-201ENST00000636230 99 ntBASIC0.82□□□□□ -2.28
LDB3O75112 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.82□□□□□ -2.28
LDB3O75112 RNU6-1260P-201ENST00000362944 107 ntBASIC0.81□□□□□ -2.28
LDB3O75112 Y_RNA.221-201ENST00000364248 96 ntBASIC0.81□□□□□ -2.28
LDB3O75112 RNU1-93P-201ENST00000364704 169 ntBASIC0.81□□□□□ -2.28
LDB3O75112 RNU6-1276P-201ENST00000365372 104 ntBASIC0.81□□□□□ -2.28
LDB3O75112 MIR644A-201ENST00000385262 94 ntBASIC0.81□□□□□ -2.28
LDB3O75112 MIR6857-201ENST00000613267 93 ntBASIC0.81□□□□□ -2.28
LDB3O75112 TRDV1-202ENST00000621643 102 ntBASIC0.81□□□□□ -2.28
LDB3O75112 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
LDB3O75112 MIR373-201ENST00000362273 69 ntBASIC0.8□□□□□ -2.28
LDB3O75112 Y_RNA.224-201ENST00000364308 111 ntBASIC0.8□□□□□ -2.28
LDB3O75112 Y_RNA.313-201ENST00000365095 103 ntBASIC0.8□□□□□ -2.28
LDB3O75112 SNORD114-22-201ENST00000365423 72 ntBASIC0.8□□□□□ -2.28
LDB3O75112 SNORD105-201ENST00000386910 85 ntBASIC0.8□□□□□ -2.28
LDB3O75112 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
LDB3O75112 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.8□□□□□ -2.28
LDB3O75112 AC097635.1-201ENST00000450678 155 ntBASIC0.8□□□□□ -2.28
LDB3O75112 AC002350.1-201ENST00000490759 375 ntBASIC0.8□□□□□ -2.28
LDB3O75112 AP003327.1-201ENST00000529684 127 ntBASIC0.8□□□□□ -2.28
LDB3O75112 MIR4536-1-201ENST00000583537 88 ntBASIC0.8□□□□□ -2.28
LDB3O75112 MIR519C-201ENST00000385053 87 ntBASIC0.79□□□□□ -2.28
LDB3O75112 RNA5SP225-201ENST00000410874 135 ntBASIC0.79□□□□□ -2.28
LDB3O75112 AC244505.6-201ENST00000452829 130 ntBASIC0.79□□□□□ -2.28
LDB3O75112 RNU7-171P-201ENST00000459581 62 ntBASIC0.79□□□□□ -2.28
LDB3O75112 ACA64.5-201ENST00000516207 127 ntBASIC0.79□□□□□ -2.28
LDB3O75112 AC138907.6-201ENST00000568401 126 ntBASIC0.79□□□□□ -2.28
LDB3O75112 AC138869.1-201ENST00000568623 124 ntBASIC0.79□□□□□ -2.28
LDB3O75112 MIR3064-201ENST00000581130 66 ntBASIC0.79□□□□□ -2.28
LDB3O75112 AC211469.2-201ENST00000605461 205 ntBASIC0.79□□□□□ -2.28
LDB3O75112 RNU6-1124P-201ENST00000384169 107 ntBASIC0.78□□□□□ -2.28
LDB3O75112 Y_RNA.508-201ENST00000384502 114 ntBASIC0.78□□□□□ -2.28
LDB3O75112 MIR608-201ENST00000384820 100 ntBASIC0.78□□□□□ -2.28
LDB3O75112 RNU6-466P-201ENST00000391224 103 ntBASIC0.78□□□□□ -2.28
LDB3O75112 RNU6-1265P-201ENST00000516342 103 ntBASIC0.78□□□□□ -2.28
LDB3O75112 RNU7-161P-201ENST00000517289 62 ntBASIC0.78□□□□□ -2.28
LDB3O75112 SNORD114-2-201ENST00000363953 78 ntBASIC0.77□□□□□ -2.29
LDB3O75112 RNU6-1187P-201ENST00000364771 110 ntBASIC0.77□□□□□ -2.29
LDB3O75112 MIR520E-201ENST00000384867 87 ntBASIC0.77□□□□□ -2.29
LDB3O75112 RNU6-1275P-201ENST00000391087 107 ntBASIC0.77□□□□□ -2.29
LDB3O75112 MIR1255A-201ENST00000408338 113 ntBASIC0.77□□□□□ -2.29
LDB3O75112 RPL39P28-201ENST00000465655 155 ntBASIC0.77□□□□□ -2.29
LDB3O75112 RNU6-65P-201ENST00000516332 98 ntBASIC0.77□□□□□ -2.29
LDB3O75112 SNORA18.5-201ENST00000516616 101 ntBASIC0.77□□□□□ -2.29
LDB3O75112 RNU7-10P-201ENST00000607194 63 ntBASIC0.77□□□□□ -2.29
LDB3O75112 SNORD115-24-201ENST00000363528 82 ntBASIC0.76□□□□□ -2.29
LDB3O75112 RNU6-811P-201ENST00000384069 107 ntBASIC0.76□□□□□ -2.29
LDB3O75112 Y_RNA.437-201ENST00000384113 113 ntBASIC0.76□□□□□ -2.29
LDB3O75112 MIR573-201ENST00000384964 99 ntBASIC0.76□□□□□ -2.29
LDB3O75112 SNORD78.1-201ENST00000390866 65 ntBASIC0.76□□□□□ -2.29
LDB3O75112 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.76□□□□□ -2.29
LDB3O75112 SNORD99-201ENST00000408612 74 ntBASIC0.76□□□□□ -2.29
LDB3O75112 AC244098.3-201ENST00000424803 96 ntBASIC0.76□□□□□ -2.29
LDB3O75112 AC140658.3-201ENST00000567603 271 ntBASIC0.76□□□□□ -2.29
LDB3O75112 MIR3612-201ENST00000579753 87 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 401.4 ms