Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MIR216A-201ENST00000385063 110 ntBASIC0.97□□□□□ -2.25
CBX4O00257 RNU6-243P-201ENST00000391140 107 ntBASIC0.97□□□□□ -2.25
CBX4O00257 Y_RNA.809-201ENST00000516058 95 ntBASIC0.97□□□□□ -2.25
CBX4O00257 ACA64.5-201ENST00000516207 127 ntBASIC0.97□□□□□ -2.25
CBX4O00257 MIR4698-201ENST00000577795 80 ntBASIC0.97□□□□□ -2.25
CBX4O00257 AC103810.7-201ENST00000607821 91 ntBASIC0.97□□□□□ -2.25
CBX4O00257 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.97□□□□□ -2.25
CBX4O00257 MTATP8P2-201ENST00000435212 202 ntBASIC0.96□□□□□ -2.26
CBX4O00257 RNU7-195P-201ENST00000458793 62 ntBASIC0.96□□□□□ -2.26
CBX4O00257 RNU7-61P-201ENST00000515897 61 ntBASIC0.96□□□□□ -2.26
CBX4O00257 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.96□□□□□ -2.26
CBX4O00257 MIR18A-201ENST00000362310 71 ntBASIC0.95□□□□□ -2.26
CBX4O00257 MIR599-201ENST00000385069 95 ntBASIC0.95□□□□□ -2.26
CBX4O00257 MIR644A-201ENST00000385262 94 ntBASIC0.95□□□□□ -2.26
CBX4O00257 RNU6-644P-201ENST00000391155 98 ntBASIC0.95□□□□□ -2.26
CBX4O00257 RNU6-887P-201ENST00000410660 100 ntBASIC0.95□□□□□ -2.26
CBX4O00257 AC244505.6-201ENST00000452829 130 ntBASIC0.95□□□□□ -2.26
CBX4O00257 CYP3A137P-201ENST00000562436 69 ntBASIC0.95□□□□□ -2.26
CBX4O00257 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
CBX4O00257 RNU6-1229P-201ENST00000364295 107 ntBASIC0.94□□□□□ -2.26
CBX4O00257 RNA5SP89-201ENST00000410300 108 ntBASIC0.94□□□□□ -2.26
CBX4O00257 RNU7-106P-201ENST00000459514 67 ntBASIC0.94□□□□□ -2.26
CBX4O00257 MIR3678-201ENST00000578455 94 ntBASIC0.94□□□□□ -2.26
CBX4O00257 RNU6-1260P-201ENST00000362944 107 ntBASIC0.93□□□□□ -2.26
CBX4O00257 Y_RNA.348-201ENST00000365403 103 ntBASIC0.93□□□□□ -2.26
CBX4O00257 SNORA36.2-201ENST00000384004 127 ntBASIC0.93□□□□□ -2.26
CBX4O00257 MIR532-201ENST00000385025 91 ntBASIC0.93□□□□□ -2.26
CBX4O00257 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.93□□□□□ -2.26
CBX4O00257 RNU6-1187P-201ENST00000364771 110 ntBASIC0.92□□□□□ -2.26
CBX4O00257 RNU6-110P-201ENST00000384508 104 ntBASIC0.92□□□□□ -2.26
CBX4O00257 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
CBX4O00257 PSMC1P5-201ENST00000512850 177 ntBASIC0.92□□□□□ -2.26
CBX4O00257 AC025521.1-201ENST00000621624 286 ntBASIC0.92□□□□□ -2.26
CBX4O00257 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
CBX4O00257 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
CBX4O00257 SNORD36A-201ENST00000362874 73 ntBASIC0.91□□□□□ -2.26
CBX4O00257 SNORD115-24-201ENST00000363528 82 ntBASIC0.91□□□□□ -2.26
CBX4O00257 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.91□□□□□ -2.26
CBX4O00257 AL513043.2-201ENST00000573941 143 ntBASIC0.91□□□□□ -2.26
CBX4O00257 MIR4639-201ENST00000584938 69 ntBASIC0.91□□□□□ -2.26
CBX4O00257 MIR6857-201ENST00000613267 93 ntBASIC0.91□□□□□ -2.26
CBX4O00257 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.91□□□□□ -2.26
CBX4O00257 SNORD116-10-201ENST00000363791 102 ntBASIC0.9□□□□□ -2.27
CBX4O00257 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.9□□□□□ -2.27
CBX4O00257 SNORD18A-201ENST00000363753 72 ntBASIC0.89□□□□□ -2.27
CBX4O00257 Y_RNA.221-201ENST00000364248 96 ntBASIC0.89□□□□□ -2.27
CBX4O00257 RNU6-524P-201ENST00000384270 107 ntBASIC0.89□□□□□ -2.27
CBX4O00257 MIR193B-201ENST00000384907 83 ntBASIC0.89□□□□□ -2.27
CBX4O00257 RNU6-466P-201ENST00000391224 103 ntBASIC0.89□□□□□ -2.27
CBX4O00257 MIR4714-201ENST00000580728 77 ntBASIC0.89□□□□□ -2.27
CBX4O00257 U7.3-201ENST00000616123 62 ntBASIC0.89□□□□□ -2.27
CBX4O00257 SNORD58A-201ENST00000383875 65 ntBASIC0.88□□□□□ -2.27
CBX4O00257 Y_RNA.648-201ENST00000459455 110 ntBASIC0.88□□□□□ -2.27
CBX4O00257 RPL39P28-201ENST00000465655 155 ntBASIC0.88□□□□□ -2.27
CBX4O00257 RNU6-640P-201ENST00000363693 105 ntBASIC0.87□□□□□ -2.27
CBX4O00257 RNU6-905P-201ENST00000384434 107 ntBASIC0.87□□□□□ -2.27
CBX4O00257 SNORD28-201ENST00000384706 75 ntBASIC0.87□□□□□ -2.27
CBX4O00257 RNU6-162P-201ENST00000516228 103 ntBASIC0.87□□□□□ -2.27
CBX4O00257 MIR1273G-201ENST00000577677 100 ntBASIC0.87□□□□□ -2.27
CBX4O00257 Y_RNA.68-201ENST00000362881 102 ntBASIC0.86□□□□□ -2.27
CBX4O00257 RNA5SP457-201ENST00000363657 124 ntBASIC0.86□□□□□ -2.27
CBX4O00257 MIR140-201ENST00000385282 100 ntBASIC0.86□□□□□ -2.27
CBX4O00257 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.86□□□□□ -2.27
CBX4O00257 AC244669.1-204ENST00000621564 178 ntBASIC0.86□□□□□ -2.27
CBX4O00257 RNU7-104P-201ENST00000459398 79 ntBASIC0.85□□□□□ -2.27
CBX4O00257 RNA5SP94-201ENST00000516917 108 ntBASIC0.85□□□□□ -2.27
CBX4O00257 AL590095.2-201ENST00000604136 117 ntBASIC0.85□□□□□ -2.27
CBX4O00257 MALAT1.1-201ENST00000618249 95 ntBASIC0.85□□□□□ -2.27
CBX4O00257 Y_RNA.220-201ENST00000364244 109 ntBASIC0.84□□□□□ -2.27
CBX4O00257 Y_RNA.694-201ENST00000516677 117 ntBASIC0.84□□□□□ -2.27
CBX4O00257 SCARNA16.5-201ENST00000517114 183 ntBASIC0.84□□□□□ -2.27
CBX4O00257 SNORD114-2-201ENST00000363953 78 ntBASIC0.83□□□□□ -2.28
CBX4O00257 Y_RNA.290-201ENST00000364879 114 ntBASIC0.83□□□□□ -2.28
CBX4O00257 MIR548L-201ENST00000408303 86 ntBASIC0.83□□□□□ -2.28
CBX4O00257 RNA5SP47-201ENST00000517230 109 ntBASIC0.83□□□□□ -2.28
CBX4O00257 TRDV1-202ENST00000621643 102 ntBASIC0.83□□□□□ -2.28
CBX4O00257 RNA5SP403-201ENST00000363598 108 ntBASIC0.82□□□□□ -2.28
CBX4O00257 RNU6-957P-201ENST00000363652 99 ntBASIC0.82□□□□□ -2.28
CBX4O00257 RNY1P8-201ENST00000383970 114 ntBASIC0.82□□□□□ -2.28
CBX4O00257 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.82□□□□□ -2.28
CBX4O00257 RNU6-519P-201ENST00000410590 108 ntBASIC0.82□□□□□ -2.28
CBX4O00257 snoU13.11-201ENST00000459219 104 ntBASIC0.82□□□□□ -2.28
CBX4O00257 RNU6-65P-201ENST00000516332 98 ntBASIC0.82□□□□□ -2.28
CBX4O00257 Y_RNA.681-201ENST00000516445 113 ntBASIC0.82□□□□□ -2.28
CBX4O00257 RNU7-161P-201ENST00000517289 62 ntBASIC0.82□□□□□ -2.28
CBX4O00257 MIR4653-201ENST00000585107 83 ntBASIC0.82□□□□□ -2.28
CBX4O00257 AC067863.3-201ENST00000624172 122 ntBASIC0.82□□□□□ -2.28
CBX4O00257 Y_RNA.115-201ENST00000363272 98 ntBASIC0.81□□□□□ -2.28
CBX4O00257 Y_RNA.283-201ENST00000364798 112 ntBASIC0.81□□□□□ -2.28
CBX4O00257 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
CBX4O00257 RNU6-1265P-201ENST00000516342 103 ntBASIC0.81□□□□□ -2.28
CBX4O00257 RNU7-13P-201ENST00000516413 62 ntBASIC0.81□□□□□ -2.28
CBX4O00257 AC092634.7-201ENST00000621022 103 ntBASIC0.81□□□□□ -2.28
CBX4O00257 Y_RNA.433-201ENST00000384089 102 ntBASIC0.8□□□□□ -2.28
CBX4O00257 RNY4P30-201ENST00000410216 95 ntBASIC0.8□□□□□ -2.28
CBX4O00257 RNA5SP227-201ENST00000516184 113 ntBASIC0.8□□□□□ -2.28
CBX4O00257 MIR4536-1-201ENST00000583537 88 ntBASIC0.8□□□□□ -2.28
CBX4O00257 AL161932.1-201ENST00000437408 146 ntBASIC0.79□□□□□ -2.28
CBX4O00257 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.79□□□□□ -2.28
CBX4O00257 RNA5SP268-201ENST00000516828 124 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 261.6 ms