Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 JTBP1-201ENST00000441314 247 ntBASIC2.3□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 uc_338.6-201ENST00000613544 171 ntBASIC2.3□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR6086-201ENST00000638065 55 ntBASIC2.3□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 SNORA6-201ENST00000384033 151 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 Y_RNA.443-201ENST00000384135 111 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 AC097510.1-201ENST00000510945 133 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR4696-201ENST00000581431 70 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 uc_338.20-201ENST00000621563 178 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR6516-201ENST00000630554 81 ntBASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR9-2-201ENST00000384838 87 ntBASIC2.28□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR514B-201ENST00000516774 80 ntBASIC2.28□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU2-19P-201ENST00000517288 84 ntBASIC2.28□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 ZNF209P-201ENST00000593450 2304 ntBASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AL606490.4-201ENST00000423117 127 ntBASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AL133373.1-201ENST00000497098 94 ntBASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU6-881P-201ENST00000516813 102 ntBASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 SNORA31.25-201ENST00000517242 134 ntBASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR502-201ENST00000606349 86 ntBASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AL627230.6-201ENST00000611129 280 ntBASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU6-580P-201ENST00000365159 107 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 SNORD45A-201ENST00000384512 84 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR548J-201ENST00000408833 112 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AC097635.1-201ENST00000450678 155 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR5694-201ENST00000581190 76 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR3140-201ENST00000583685 90 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AC013244.2-201ENST00000603396 103 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 U6.81-201ENST00000612550 106 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AC103706.3-201ENST00000636297 85 ntBASIC2.26□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AL596028.1-201ENST00000326971 197 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 SNORD45.1-201ENST00000363181 77 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 SNORA24B-201ENST00000384176 131 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU6-935P-201ENST00000410371 100 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AC092628.1-201ENST00000436250 252 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU6-947P-201ENST00000516264 106 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AP003716.2-201ENST00000528260 108 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MTRNR2L2-201ENST00000604882 87 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 U6.100-201ENST00000636230 99 ntBASIC2.25□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR103A2-201ENST00000362154 78 ntBASIC2.24□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU1-93P-201ENST00000364704 169 ntBASIC2.24□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR1185-1-201ENST00000408598 86 ntBASIC2.24□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR6840-201ENST00000611937 71 ntBASIC2.24□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU6-1216P-201ENST00000362590 107 ntBASIC2.23□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR1257-201ENST00000408490 117 ntBASIC2.23□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR6082-201ENST00000613604 109 ntBASIC2.23□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNA5SP264-201ENST00000363115 107 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR1323-201ENST00000408090 73 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 snoU13.25-201ENST00000458945 104 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU7-185P-201ENST00000459215 60 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 Y_RNA.697-201ENST00000516776 113 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU6-765P-201ENST00000516916 99 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNU1-92P-201ENST00000517017 135 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 MIR4511-201ENST00000582784 87 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 AL359851.1-201ENST00000569460 4997 ntBASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.22□□□□□ -2.05
SENP3-EIF4A1A0A087X0R7 RNA5SP257-201ENST00000363023 116 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-654P-201ENST00000364373 107 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 SNORD115-22-201ENST00000364456 82 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 MIR193B-201ENST00000384907 83 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-141P-201ENST00000410499 105 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 AC015688.6-201ENST00000577737 104 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 AC023934.1-201ENST00000574529 2389 ntBASIC2.21□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 Y_RNA.13-201ENST00000362403 112 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-824P-201ENST00000363724 104 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 MIR451A-201ENST00000385059 72 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNA5SP212-201ENST00000391223 107 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 SNORD23.1-201ENST00000408212 104 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNA5SP95-201ENST00000410319 137 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-1054P-201ENST00000411293 104 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU7-193P-201ENST00000516723 65 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 AC138907.6-201ENST00000568401 126 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 AC138869.1-201ENST00000568623 124 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 MIR1273G-201ENST00000577677 100 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 AL645939.4-201ENST00000604495 135 ntBASIC2.2□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 SNORA3A-201ENST00000364113 130 ntBASIC2.19□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 MIR599-201ENST00000385069 95 ntBASIC2.19□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-752P-201ENST00000516376 102 ntBASIC2.19□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-1057P-201ENST00000517162 102 ntBASIC2.19□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 SNORD113.1-201ENST00000363280 73 ntBASIC2.18□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-274P-201ENST00000459566 107 ntBASIC2.18□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 DLEU2_3.2-201ENST00000612883 73 ntBASIC2.18□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-669P-201ENST00000365575 107 ntBASIC2.17□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-604P-201ENST00000390917 100 ntBASIC2.17□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 AL354695.1-201ENST00000427935 228 ntBASIC2.17□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 MIR2113-201ENST00000459007 91 ntBASIC2.17□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 SNORD53B-201ENST00000577887 78 ntBASIC2.17□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 MIR4421-201ENST00000578133 69 ntBASIC2.17□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 AC069503.3-201ENST00000618674 145 ntBASIC2.17□□□□□ -2.06
SENP3-EIF4A1A0A087X0R7 RNU6-439P-201ENST00000384188 106 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 216.5 ms