Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.99□□□□□ -2.25
VSX1Q9NZR4 AC008608.1-201ENST00000603910 127 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 AC103810.7-201ENST00000607821 91 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 MALAT1.1-201ENST00000618249 95 ntBASIC0.99□□□□□ -2.25
VSX1Q9NZR4 MIR181B2-201ENST00000385004 89 ntBASIC0.98□□□□□ -2.25
VSX1Q9NZR4 SNORD63B-201ENST00000411005 70 ntBASIC0.98□□□□□ -2.25
VSX1Q9NZR4 AC092628.1-201ENST00000436250 252 ntBASIC0.98□□□□□ -2.25
VSX1Q9NZR4 AC097635.1-201ENST00000450678 155 ntBASIC0.98□□□□□ -2.25
VSX1Q9NZR4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
VSX1Q9NZR4 RNU6-1260P-201ENST00000362944 107 ntBASIC0.97□□□□□ -2.25
VSX1Q9NZR4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
VSX1Q9NZR4 RNU6-291P-201ENST00000384720 107 ntBASIC0.97□□□□□ -2.25
VSX1Q9NZR4 AC002350.1-201ENST00000490759 375 ntBASIC0.97□□□□□ -2.25
VSX1Q9NZR4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.97□□□□□ -2.25
VSX1Q9NZR4 U7.3-201ENST00000616123 62 ntBASIC0.97□□□□□ -2.25
VSX1Q9NZR4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.96□□□□□ -2.26
VSX1Q9NZR4 Y_RNA.43-201ENST00000362670 111 ntBASIC0.96□□□□□ -2.26
VSX1Q9NZR4 RNY4P30-201ENST00000410216 95 ntBASIC0.96□□□□□ -2.26
VSX1Q9NZR4 MIR548Z-201ENST00000584743 97 ntBASIC0.96□□□□□ -2.26
VSX1Q9NZR4 snoU13.31-201ENST00000607291 104 ntBASIC0.96□□□□□ -2.26
VSX1Q9NZR4 SNORD36A-201ENST00000362874 73 ntBASIC0.95□□□□□ -2.26
VSX1Q9NZR4 Y_RNA.327-201ENST00000365201 102 ntBASIC0.95□□□□□ -2.26
VSX1Q9NZR4 MIR573-201ENST00000384964 99 ntBASIC0.95□□□□□ -2.26
VSX1Q9NZR4 AC244505.6-201ENST00000452829 130 ntBASIC0.95□□□□□ -2.26
VSX1Q9NZR4 Y_RNA.648-201ENST00000459455 110 ntBASIC0.95□□□□□ -2.26
VSX1Q9NZR4 Y_RNA.809-201ENST00000516058 95 ntBASIC0.95□□□□□ -2.26
VSX1Q9NZR4 uc_338.16-201ENST00000621804 95 ntBASIC0.95□□□□□ -2.26
VSX1Q9NZR4 TRAJ51-201ENST00000504127 63 ntBASIC0.94□□□□□ -2.26
VSX1Q9NZR4 RNU6-469P-201ENST00000516253 101 ntBASIC0.94□□□□□ -2.26
VSX1Q9NZR4 AL513043.2-201ENST00000573941 143 ntBASIC0.94□□□□□ -2.26
VSX1Q9NZR4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.94□□□□□ -2.26
VSX1Q9NZR4 MIR6078-201ENST00000611069 100 ntBASIC0.94□□□□□ -2.26
VSX1Q9NZR4 RNU6-1298P-201ENST00000362456 101 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 Y_RNA.290-201ENST00000364879 114 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 MIR516A2-201ENST00000384888 90 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 MIR516A1-201ENST00000385033 90 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 RPL39P28-201ENST00000465655 155 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.93□□□□□ -2.26
VSX1Q9NZR4 MIR4498-201ENST00000577599 66 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 MIR4295-201ENST00000585286 85 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 SNORD114-21-201ENST00000606412 72 ntBASIC0.93□□□□□ -2.26
VSX1Q9NZR4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
VSX1Q9NZR4 Y_RNA.338-201ENST00000365320 114 ntBASIC0.92□□□□□ -2.26
VSX1Q9NZR4 RNU7-106P-201ENST00000459514 67 ntBASIC0.92□□□□□ -2.26
VSX1Q9NZR4 MIR5582-201ENST00000579697 68 ntBASIC0.92□□□□□ -2.26
VSX1Q9NZR4 AC025521.1-201ENST00000621624 286 ntBASIC0.92□□□□□ -2.26
VSX1Q9NZR4 SNORD114-27-201ENST00000363766 70 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 MIR599-201ENST00000385069 95 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 RNU6-466P-201ENST00000391224 103 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 AL161932.1-201ENST00000437408 146 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 RNU6-844P-201ENST00000517175 102 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 AL353765.1-201ENST00000605514 183 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 AC103810.9-201ENST00000606688 112 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.91□□□□□ -2.26
VSX1Q9NZR4 MIR488-201ENST00000365739 83 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 SNORD116-22-201ENST00000384430 92 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 RNU6-321P-201ENST00000410912 106 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 RNU7-195P-201ENST00000458793 62 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 AC087343.1-201ENST00000477341 475 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 SNORA31.14-201ENST00000516728 116 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 MIR4639-201ENST00000584938 69 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 AC006254.2-201ENST00000603259 279 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.9□□□□□ -2.27
VSX1Q9NZR4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
VSX1Q9NZR4 MIR337-201ENST00000362281 93 ntBASIC0.89□□□□□ -2.27
VSX1Q9NZR4 RNU6-1255P-201ENST00000363434 112 ntBASIC0.89□□□□□ -2.27
VSX1Q9NZR4 RNU4-38P-201ENST00000364472 129 ntBASIC0.89□□□□□ -2.27
VSX1Q9NZR4 SNORD99-201ENST00000408612 74 ntBASIC0.89□□□□□ -2.27
VSX1Q9NZR4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.89□□□□□ -2.27
VSX1Q9NZR4 TRMT112P2-201ENST00000512910 132 ntBASIC0.89□□□□□ -2.27
VSX1Q9NZR4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.89□□□□□ -2.27
VSX1Q9NZR4 MIR3612-201ENST00000579753 87 ntBASIC0.89□□□□□ -2.27
VSX1Q9NZR4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.89□□□□□ -2.27
VSX1Q9NZR4 MIR96-201ENST00000362288 78 ntBASIC0.88□□□□□ -2.27
VSX1Q9NZR4 Y_RNA.32-201ENST00000362589 110 ntBASIC0.88□□□□□ -2.27
VSX1Q9NZR4 RNU6-1131P-201ENST00000364955 107 ntBASIC0.88□□□□□ -2.27
VSX1Q9NZR4 Y_RNA.558-201ENST00000384685 113 ntBASIC0.88□□□□□ -2.27
VSX1Q9NZR4 RNU6-519P-201ENST00000410590 108 ntBASIC0.88□□□□□ -2.27
VSX1Q9NZR4 RNU6-162P-201ENST00000516228 103 ntBASIC0.88□□□□□ -2.27
VSX1Q9NZR4 AC026421.1-201ENST00000519101 163 ntBASIC0.88□□□□□ -2.27
VSX1Q9NZR4 RNU6-294P-201ENST00000364999 102 ntBASIC0.87□□□□□ -2.27
VSX1Q9NZR4 RNU6-65P-201ENST00000516332 98 ntBASIC0.87□□□□□ -2.27
VSX1Q9NZR4 MIR4536-1-201ENST00000583537 88 ntBASIC0.87□□□□□ -2.27
VSX1Q9NZR4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.87□□□□□ -2.27
VSX1Q9NZR4 Y_RNA.190-201ENST00000363964 101 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 RNA5SP245-201ENST00000364239 121 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 RNU6-1229P-201ENST00000364295 107 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 RNU6-392P-201ENST00000364926 101 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 SNORD115-44-201ENST00000365391 82 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 RNU6-1335P-201ENST00000365426 107 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 MIR608-201ENST00000384820 100 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 AC244098.3-201ENST00000424803 96 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 RNU6-1053P-201ENST00000515930 101 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 AC011195.1-201ENST00000578177 177 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.86□□□□□ -2.27
VSX1Q9NZR4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.86□□□□□ -2.27
VSX1Q9NZR4 Y_RNA.4-201ENST00000362333 112 ntBASIC0.85□□□□□ -2.27
VSX1Q9NZR4 Y_RNA.283-201ENST00000364798 112 ntBASIC0.85□□□□□ -2.27
VSX1Q9NZR4 RNU6-110P-201ENST00000384508 104 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 265.3 ms