Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 MT-TL1-201ENST00000386347 75 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 SNORD116.3-201ENST00000517176 78 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 MIR6129-201ENST00000616087 109 ntBASIC-1.17□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 SNORD77B-201ENST00000391112 67 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 MIR548F1-201ENST00000408667 84 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 SCARNA18B-201ENST00000458806 135 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 AC021146.9-201ENST00000512503 156 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 RNA5SP180-201ENST00000516181 101 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 AL442663.2-201ENST00000554385 511 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 MIR5704-201ENST00000584029 77 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 RNU6-973P-201ENST00000364690 107 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 RNU6-431P-201ENST00000383874 107 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 AL500527.2-201ENST00000454105 95 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 RNU7-106P-201ENST00000459514 67 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 MIR4744-201ENST00000581563 82 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 MIR382-201ENST00000637119 76 ntBASIC-1.18□□□□□ -2.6
SCN3AQ9NY46 SNORD115-25-201ENST00000362619 82 ntBASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 RNU6-211P-201ENST00000384047 107 ntBASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 snoU13.13-201ENST00000458842 104 ntBASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 RNU6-240P-201ENST00000516098 97 ntBASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 MIR4308-201ENST00000580634 81 ntBASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 AC145423.2-201ENST00000610631 239 ntBASIC-1.19□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 RNU6-476P-201ENST00000384726 107 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 AC082651.2-201ENST00000496833 166 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 MIR5591-201ENST00000578248 65 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.3-201ENST00000362331 103 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Z83846.1-201ENST00000446798 265 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 RNU6-158P-201ENST00000517104 100 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 AC087741.2-201ENST00000619415 172 ntBASIC-1.2□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.197-201ENST00000364004 102 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 RNU6-806P-201ENST00000365147 105 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 AC097510.1-201ENST00000510945 133 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 RNU6-1143P-201ENST00000516125 104 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 AC026407.1-201ENST00000518369 204 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 MIR1246-201ENST00000636535 73 ntBASIC-1.21□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 RNU6-381P-201ENST00000391259 108 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 MIR1302-11-201ENST00000408051 138 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 MIR1302-9-201ENST00000408365 138 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 MIR1302-10-201ENST00000408734 138 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 MIR1302-2-201ENST00000607096 138 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 AC084781.2-201ENST00000615568 161 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.26-201ENST00000362539 101 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 RNU6-651P-201ENST00000411040 105 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 MTND5P22-201ENST00000458380 195 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 snoU83B.1-201ENST00000517136 88 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 AC080013.6-201ENST00000606185 215 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 MIR6773-201ENST00000612812 74 ntBASIC-1.22□□□□□ -2.6
SCN3AQ9NY46 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 SNORD115-23-201ENST00000364461 82 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 RNU6-823P-201ENST00000391042 103 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.590-201ENST00000410140 107 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 RNU6-1006P-201ENST00000516998 103 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.84-201ENST00000363011 104 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 RNY4P6-201ENST00000363667 96 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 RNU6-226P-201ENST00000363778 107 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 SNORD101-201ENST00000384027 73 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.23□□□□□ -2.61
SCN3AQ9NY46 RNU6-623P-201ENST00000363143 105 ntBASIC-1.24□□□□□ -2.61
SCN3AQ9NY46 MIR4770-201ENST00000579149 58 ntBASIC-1.24□□□□□ -2.61
SCN3AQ9NY46 RNU6-643P-201ENST00000384018 107 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 RNU6-976P-201ENST00000516086 111 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 RNY4P20-201ENST00000516678 93 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 YWHAEP3-201ENST00000582767 121 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 SNORD115-19-201ENST00000363098 82 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 SNORD115-18-201ENST00000363293 82 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 SNORD115-17-201ENST00000364612 82 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 AC132825.6-201ENST00000638861 357 ntBASIC-1.25□□□□□ -2.61
SCN3AQ9NY46 RNU6-326P-201ENST00000365480 107 ntBASIC-1.26□□□□□ -2.61
SCN3AQ9NY46 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.26□□□□□ -2.61
SCN3AQ9NY46 MIR335-201ENST00000362173 94 ntBASIC-1.27□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 280.9 ms