Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-813P-201ENST00000384691 107 ntBASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-535P-201ENST00000384722 107 ntBASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.56-201ENST00000362798 112 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.57-201ENST00000362806 113 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.355-201ENST00000365462 98 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 TRAJ51-201ENST00000504127 63 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.705-201ENST00000516862 110 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 MIR4452-201ENST00000583004 71 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 AC103810.7-201ENST00000607821 91 ntBASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
PCIF1Q9H4Z3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.32-201ENST00000362589 110 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.342-201ENST00000365352 113 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 AC092628.1-201ENST00000436250 252 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 MIR548H5-201ENST00000580314 60 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 AC025627.3-201ENST00000582078 182 ntBASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
PCIF1Q9H4Z3 RNA5SP245-201ENST00000364239 121 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.224-201ENST00000364308 111 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR573-201ENST00000384964 99 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR181B2-201ENST00000385004 89 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 SNORD99-201ENST00000408612 74 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 SNORD63B-201ENST00000411005 70 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 OR2A41P-201ENST00000473586 105 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR2052-201ENST00000636055 55 ntBASIC1.1□□□□□ -2.23
PCIF1Q9H4Z3 MIR488-201ENST00000365739 83 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 MIR635-201ENST00000384830 98 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 MIR516A2-201ENST00000384888 90 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 MIR516A1-201ENST00000385033 90 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-887P-201ENST00000410660 100 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 snoU13.18-201ENST00000459483 104 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 AC002350.1-201ENST00000490759 375 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 RNU7-10P-201ENST00000607194 63 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 U7.3-201ENST00000616123 62 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 AC025521.1-201ENST00000621624 286 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 uc_338.16-201ENST00000621804 95 ntBASIC1.09□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.96-201ENST00000363092 109 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-1125P-201ENST00000363601 107 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU4-38P-201ENST00000364472 129 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-480P-201ENST00000384332 107 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU7-106P-201ENST00000459514 67 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-162P-201ENST00000516228 103 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 SNORA31.14-201ENST00000516728 116 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.08□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-1298P-201ENST00000362456 101 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.290-201ENST00000364879 114 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-972P-201ENST00000391208 107 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 RNA5SP220-201ENST00000516298 104 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 MALAT1.1-201ENST00000618249 95 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 MIR7111-201ENST00000619751 72 ntBASIC1.07□□□□□ -2.24
PCIF1Q9H4Z3 MIR96-201ENST00000362288 78 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-42P-201ENST00000384165 107 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 MIR519A1-201ENST00000385257 85 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 AC244098.3-201ENST00000424803 96 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 RNU7-195P-201ENST00000458793 62 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 AL513043.2-201ENST00000573941 143 ntBASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.06□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.118-201ENST00000363300 101 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AC138907.6-201ENST00000568401 126 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AC138869.1-201ENST00000568623 124 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AC011195.1-201ENST00000578177 177 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 MIR3612-201ENST00000579753 87 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 MIR4661-201ENST00000582720 75 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 AL353765.1-201ENST00000605514 183 ntBASIC1.05□□□□□ -2.24
PCIF1Q9H4Z3 SNORD36A-201ENST00000362874 73 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.174-201ENST00000363781 105 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 SNORD114-22-201ENST00000365423 72 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 RNU6-1254P-201ENST00000391266 104 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 AC097635.1-201ENST00000450678 155 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 Y_RNA.694-201ENST00000516677 117 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 AL078603.1-201ENST00000603824 313 ntBASIC1.04□□□□□ -2.24
PCIF1Q9H4Z3 RNA5SP117-201ENST00000365294 118 ntBASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 SNORD58A-201ENST00000383875 65 ntBASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 RNY4P30-201ENST00000410216 95 ntBASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
PCIF1Q9H4Z3 SNORD116-10-201ENST00000363791 102 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 RNU1-93P-201ENST00000364704 169 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-1131P-201ENST00000364955 107 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 MIR599-201ENST00000385069 95 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 AC244505.6-201ENST00000452829 130 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 Y_RNA.809-201ENST00000516058 95 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 MIR6767-201ENST00000637302 66 ntBASIC1.02□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-1260P-201ENST00000362944 107 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 RNY1P7-201ENST00000384743 110 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 MIR644A-201ENST00000385262 94 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-243P-201ENST00000391140 107 ntBASIC1.01□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-49P-201ENST00000384256 107 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 RNA5SP170-201ENST00000517150 101 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 MIR4698-201ENST00000577795 80 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1□□□□□ -2.25
PCIF1Q9H4Z3 Y_RNA.190-201ENST00000363964 101 ntBASIC0.99□□□□□ -2.25
PCIF1Q9H4Z3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.99□□□□□ -2.25
PCIF1Q9H4Z3 MIR3973-201ENST00000579824 107 ntBASIC0.99□□□□□ -2.25
PCIF1Q9H4Z3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 234.5 ms