Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC004941.2-201ENST00000427009 228 ntBASIC0.82□□□□□ -2.28
MMP28Q9H239 FABP5P4-201ENST00000437203 171 ntBASIC0.82□□□□□ -2.28
MMP28Q9H239 SNRPGP12-201ENST00000449481 213 ntBASIC0.82□□□□□ -2.28
MMP28Q9H239 RNU6-86P-201ENST00000606534 107 ntBASIC0.82□□□□□ -2.28
MMP28Q9H239 Y_RNA.93-201ENST00000363066 109 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 Y_RNA.173-201ENST00000363776 113 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 RNU4-38P-201ENST00000364472 129 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 Y_RNA.567-201ENST00000384736 106 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 MIR520H-201ENST00000385126 88 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 RNU6-644P-201ENST00000391155 98 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.81□□□□□ -2.28
MMP28Q9H239 RNU7-61P-201ENST00000515897 61 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 RNU6-1110P-201ENST00000516462 101 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 RNU6-765P-201ENST00000516916 99 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 RNU6-850P-201ENST00000516934 103 ntBASIC0.81□□□□□ -2.28
MMP28Q9H239 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
MMP28Q9H239 SNORD114-24-201ENST00000365029 72 ntBASIC0.8□□□□□ -2.28
MMP28Q9H239 MIR7-2-201ENST00000384970 110 ntBASIC0.8□□□□□ -2.28
MMP28Q9H239 SNORD100-201ENST00000408573 76 ntBASIC0.8□□□□□ -2.28
MMP28Q9H239 MTATP8P2-201ENST00000435212 202 ntBASIC0.8□□□□□ -2.28
MMP28Q9H239 RNU6-1194P-201ENST00000516208 104 ntBASIC0.8□□□□□ -2.28
MMP28Q9H239 Y_RNA.697-201ENST00000516776 113 ntBASIC0.8□□□□□ -2.28
MMP28Q9H239 RNA5SP480-201ENST00000516840 109 ntBASIC0.8□□□□□ -2.28
MMP28Q9H239 MIR101-2-201ENST00000362195 79 ntBASIC0.79□□□□□ -2.28
MMP28Q9H239 RNU6-1244P-201ENST00000363614 108 ntBASIC0.79□□□□□ -2.28
MMP28Q9H239 RNU6-571P-201ENST00000384128 107 ntBASIC0.79□□□□□ -2.28
MMP28Q9H239 MIR146A-201ENST00000385201 99 ntBASIC0.79□□□□□ -2.28
MMP28Q9H239 SNORD105-201ENST00000386910 85 ntBASIC0.79□□□□□ -2.28
MMP28Q9H239 U7.7-201ENST00000459276 60 ntBASIC0.79□□□□□ -2.28
MMP28Q9H239 SNORA40.13-201ENST00000516379 120 ntBASIC0.79□□□□□ -2.28
MMP28Q9H239 Y_RNA.540-201ENST00000384638 111 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 RNU6-813P-201ENST00000384691 107 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 RNU6-291P-201ENST00000384720 107 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 RNU6-162P-201ENST00000516228 103 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 RNA5SP255-201ENST00000516370 107 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 RNU6-158P-201ENST00000517104 100 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.78□□□□□ -2.28
MMP28Q9H239 MIR4439-201ENST00000583746 80 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 AC103810.7-201ENST00000607821 91 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 AL136317.1-201ENST00000612653 226 ntBASIC0.78□□□□□ -2.28
MMP28Q9H239 RNU6-1298P-201ENST00000362456 101 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 Y_RNA.57-201ENST00000362806 113 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 RNA5SP245-201ENST00000364239 121 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 MIR488-201ENST00000365739 83 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 Y_RNA.536-201ENST00000384621 113 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 RNU6-535P-201ENST00000384722 107 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 MIR181B2-201ENST00000385004 89 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 TRAJ51-201ENST00000504127 63 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 RNU6-448P-201ENST00000517052 107 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 AC211469.2-201ENST00000605461 205 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 U7.3-201ENST00000616123 62 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 PVT1_3.1-201ENST00000620853 95 ntBASIC0.77□□□□□ -2.29
MMP28Q9H239 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
MMP28Q9H239 MIR373-201ENST00000362273 69 ntBASIC0.76□□□□□ -2.29
MMP28Q9H239 Y_RNA.342-201ENST00000365352 113 ntBASIC0.76□□□□□ -2.29
MMP28Q9H239 MIR598-201ENST00000384868 97 ntBASIC0.76□□□□□ -2.29
MMP28Q9H239 SNORD63B-201ENST00000411005 70 ntBASIC0.76□□□□□ -2.29
MMP28Q9H239 RNU7-106P-201ENST00000459514 67 ntBASIC0.76□□□□□ -2.29
MMP28Q9H239 Y_RNA.705-201ENST00000516862 110 ntBASIC0.76□□□□□ -2.29
MMP28Q9H239 AP003327.1-201ENST00000529684 127 ntBASIC0.76□□□□□ -2.29
MMP28Q9H239 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.75□□□□□ -2.29
MMP28Q9H239 Y_RNA.32-201ENST00000362589 110 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 Y_RNA.56-201ENST00000362798 112 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 MIR516A2-201ENST00000384888 90 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 MIR532-201ENST00000385025 91 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 MIR516A1-201ENST00000385033 90 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 RNY4P30-201ENST00000410216 95 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 RNU6-887P-201ENST00000410660 100 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 AC092628.1-201ENST00000436250 252 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 RNA5SP436-201ENST00000516020 115 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 MIR3973-201ENST00000579824 107 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.75□□□□□ -2.29
MMP28Q9H239 MALAT1.1-201ENST00000618249 95 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 AC025521.1-201ENST00000621624 286 ntBASIC0.75□□□□□ -2.29
MMP28Q9H239 Y_RNA.290-201ENST00000364879 114 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 MIR635-201ENST00000384830 98 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 SNORD99-201ENST00000408612 74 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 RNU7-195P-201ENST00000458793 62 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 SNORA31.14-201ENST00000516728 116 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 AL513043.2-201ENST00000573941 143 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 MIR548H5-201ENST00000580314 60 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 MIR6857-201ENST00000613267 93 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 uc_338.16-201ENST00000621804 95 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 MIR2052-201ENST00000636055 55 ntBASIC0.74□□□□□ -2.29
MMP28Q9H239 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
MMP28Q9H239 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.73□□□□□ -2.29
MMP28Q9H239 RNU6-1125P-201ENST00000363601 107 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 RNU6-1131P-201ENST00000364955 107 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 RNU6-480P-201ENST00000384332 107 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 RNY1P7-201ENST00000384743 110 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 MIR573-201ENST00000384964 99 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 RNU6-972P-201ENST00000391208 107 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.73□□□□□ -2.29
MMP28Q9H239 AC002350.1-201ENST00000490759 375 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 MIR5000-201ENST00000577717 103 ntBASIC0.73□□□□□ -2.29
MMP28Q9H239 MIR4698-201ENST00000577795 80 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 208.5 ms