Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU6-312P-201ENST00000364629 107 ntBASIC-0.59□□□□□ -2.5
SHANK3Q9BYB0 U8.6-201ENST00000364939 135 ntBASIC-0.59□□□□□ -2.5
SHANK3Q9BYB0 SNORD38.2-201ENST00000384470 69 ntBASIC-0.59□□□□□ -2.5
SHANK3Q9BYB0 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.59□□□□□ -2.5
SHANK3Q9BYB0 MTATP6P21-201ENST00000440681 189 ntBASIC-0.59□□□□□ -2.5
SHANK3Q9BYB0 SNORD114-14-201ENST00000362723 75 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.277-201ENST00000364754 102 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 RNU6-472P-201ENST00000384299 107 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 RNU6-768P-201ENST00000384683 107 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 MT-TY-201ENST00000387409 66 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 RNA5SP66-201ENST00000517178 101 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 AC007012.1-201ENST00000567192 175 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 MIR8062-201ENST00000621515 85 ntBASIC-0.6□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.76-201ENST00000362931 109 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.509-201ENST00000384506 99 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 MT-TW-201ENST00000387382 68 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 RNU6-493P-201ENST00000391321 108 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 AL603914.1-201ENST00000401964 204 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 RNU7-106P-201ENST00000459514 67 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 RNU6-175P-201ENST00000516896 107 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 MIR378F-201ENST00000578143 78 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 AC093726.3-201ENST00000637588 150 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 SNORD114-11-201ENST00000363738 75 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 RNU6-275P-201ENST00000364910 107 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.422-201ENST00000384054 114 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 MIR516A2-201ENST00000384888 90 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 MIR516A1-201ENST00000385033 90 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 MIR376B-201ENST00000614515 100 ntBASIC-0.61□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.54-201ENST00000362766 105 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.138-201ENST00000363462 102 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 RNU6-524P-201ENST00000384270 107 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.535-201ENST00000384612 99 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 RNU6-287P-201ENST00000516230 98 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 MIR4432-201ENST00000581823 84 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 MIR4473-201ENST00000583731 91 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 MIR3149-201ENST00000584629 83 ntBASIC-0.62□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.182-201ENST00000363880 111 ntBASIC-0.63□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.521-201ENST00000384560 114 ntBASIC-0.63□□□□□ -2.51
SHANK3Q9BYB0 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.63□□□□□ -2.51
SHANK3Q9BYB0 RNU6-850P-201ENST00000516934 103 ntBASIC-0.63□□□□□ -2.51
SHANK3Q9BYB0 MIR4460-201ENST00000577862 86 ntBASIC-0.63□□□□□ -2.51
SHANK3Q9BYB0 AL137067.1-201ENST00000615933 120 ntBASIC-0.63□□□□□ -2.51
SHANK3Q9BYB0 RNU6-238P-201ENST00000363313 106 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 RNU6-243P-201ENST00000391140 107 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 MIR2113-201ENST00000459007 91 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 SNORD36A-201ENST00000362874 73 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.483-201ENST00000384380 101 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 SNORA75.5-201ENST00000391291 81 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 SNORD58.1-201ENST00000391313 66 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 RNU6-588P-201ENST00000410281 105 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 AC244090.1-201ENST00000441884 93 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.64□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.61-201ENST00000362835 102 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 RNU6-154P-201ENST00000384306 106 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 SNORA13-201ENST00000458790 133 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 U6.106-201ENST00000636360 105 ntBASIC-0.65□□□□□ -2.51
SHANK3Q9BYB0 SNORD114-4-201ENST00000363962 75 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 RNU6-309P-201ENST00000364573 106 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 RNU6-900P-201ENST00000384498 102 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 RNU6-455P-201ENST00000384681 107 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 MIR204-201ENST00000385200 110 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 MIR759-201ENST00000390224 91 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 Y_RNA.701-201ENST00000516812 110 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 MIR548AG2-201ENST00000581228 64 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 AC044792.1-201ENST00000593294 196 ntBASIC-0.66□□□□□ -2.51
SHANK3Q9BYB0 RNU6-47P-201ENST00000383866 107 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 Y_RNA.512-201ENST00000384518 102 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 SNORD27-201ENST00000363981 72 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 MIR539-201ENST00000365690 78 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 RNU6-901P-201ENST00000384593 106 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 MIR548H3-201ENST00000408771 118 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 Y_RNA.626-201ENST00000411288 95 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 SNORD127-201ENST00000458892 86 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 MIR4308-201ENST00000580634 81 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 MIR4280-201ENST00000582178 76 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 AC021753.1-201ENST00000635724 168 ntBASIC-0.67□□□□□ -2.52
SHANK3Q9BYB0 RNU6-664P-201ENST00000362381 107 ntBASIC-0.68□□□□□ -2.52
SHANK3Q9BYB0 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.68□□□□□ -2.52
SHANK3Q9BYB0 AC021146.6-201ENST00000514659 117 ntBASIC-0.68□□□□□ -2.52
SHANK3Q9BYB0 Y_RNA.216-201ENST00000364205 93 ntBASIC-0.69□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms