Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR4315-2-201ENST00000640925 73 ntBASIC0.22□□□□□ -2.37
CCDC3Q9BQI4 RNU6-170P-201ENST00000362832 104 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 RNU6-363P-201ENST00000362895 105 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 RNA5SP62-201ENST00000363457 110 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 SNORD50.2-201ENST00000365465 70 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 SNORD41.1-201ENST00000391000 69 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 RNU6-257P-201ENST00000410238 98 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 TRAJ51-201ENST00000504127 63 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 RNU6-781P-201ENST00000516377 101 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 AC069113.3-201ENST00000521019 150 ntBASIC0.21□□□□□ -2.38
CCDC3Q9BQI4 Y_RNA.49-201ENST00000362714 112 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 Y_RNA.346-201ENST00000365385 112 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 AC069271.1-201ENST00000445577 156 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 RNU7-161P-201ENST00000517289 62 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 AC025166.1-201ENST00000612411 163 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 MIR6718-201ENST00000616153 80 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 AL162376.1-201ENST00000624117 175 ntBASIC0.2□□□□□ -2.38
CCDC3Q9BQI4 RNU6-1260P-201ENST00000362944 107 ntBASIC0.19□□□□□ -2.38
CCDC3Q9BQI4 MIR34C-201ENST00000384831 77 ntBASIC0.19□□□□□ -2.38
CCDC3Q9BQI4 Y_RNA.681-201ENST00000516445 113 ntBASIC0.19□□□□□ -2.38
CCDC3Q9BQI4 MIR6755-201ENST00000619993 66 ntBASIC0.19□□□□□ -2.38
CCDC3Q9BQI4 RNU6-1313P-201ENST00000362622 102 ntBASIC0.18□□□□□ -2.38
CCDC3Q9BQI4 RNU6-209P-201ENST00000384118 107 ntBASIC0.18□□□□□ -2.38
CCDC3Q9BQI4 MIR599-201ENST00000385069 95 ntBASIC0.18□□□□□ -2.38
CCDC3Q9BQI4 RNU6-735P-201ENST00000410612 107 ntBASIC0.18□□□□□ -2.38
CCDC3Q9BQI4 BX276092.1-201ENST00000427368 251 ntBASIC0.18□□□□□ -2.38
CCDC3Q9BQI4 MIR5706-201ENST00000579841 80 ntBASIC0.18□□□□□ -2.38
CCDC3Q9BQI4 AC067863.3-201ENST00000624172 122 ntBASIC0.18□□□□□ -2.38
CCDC3Q9BQI4 MTND5P18-201ENST00000445624 1801 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 Y_RNA.35-201ENST00000362601 101 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 Y_RNA.342-201ENST00000365352 113 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 RNU6-815P-201ENST00000384080 113 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 Y_RNA.586-201ENST00000391146 98 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 SNORD63B-201ENST00000411005 70 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 RNA5SP272-201ENST00000516095 111 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 RNU6-1006P-201ENST00000516998 103 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 MIR4679-2-201ENST00000578358 77 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 MIR1255B1-201ENST00000636325 63 ntBASIC0.17□□□□□ -2.38
CCDC3Q9BQI4 SNORA9.1-201ENST00000362412 131 ntBASIC0.16□□□□□ -2.38
CCDC3Q9BQI4 RNU6-235P-201ENST00000362644 107 ntBASIC0.16□□□□□ -2.38
CCDC3Q9BQI4 SNORA42.1-201ENST00000363515 137 ntBASIC0.16□□□□□ -2.38
CCDC3Q9BQI4 Y_RNA.362-201ENST00000365518 110 ntBASIC0.16□□□□□ -2.38
CCDC3Q9BQI4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
CCDC3Q9BQI4 AC073261.1-201ENST00000429409 121 ntBASIC0.16□□□□□ -2.38
CCDC3Q9BQI4 RPL39P34-201ENST00000477141 156 ntBASIC0.16□□□□□ -2.38
CCDC3Q9BQI4 RNU6-80P-201ENST00000384195 107 ntBASIC0.15□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.809-201ENST00000516058 95 ntBASIC0.15□□□□□ -2.39
CCDC3Q9BQI4 RNU6-346P-201ENST00000516288 111 ntBASIC0.15□□□□□ -2.39
CCDC3Q9BQI4 RNU6-850P-201ENST00000516934 103 ntBASIC0.15□□□□□ -2.39
CCDC3Q9BQI4 RNU1-29P-201ENST00000606574 126 ntBASIC0.15□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 SNORD38.1-201ENST00000363863 68 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.344-201ENST00000365381 112 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 SNORA2A-201ENST00000383885 135 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.507-201ENST00000384500 99 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 MIR1912-201ENST00000410389 80 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 RNU6-772P-201ENST00000516042 105 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 RNU6-1061P-201ENST00000516530 99 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.712-201ENST00000517011 92 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 AC073869.9-201ENST00000641610 120 ntBASIC0.14□□□□□ -2.39
CCDC3Q9BQI4 RNU6-409P-201ENST00000384114 104 ntBASIC0.13□□□□□ -2.39
CCDC3Q9BQI4 AL353813.1-201ENST00000440700 253 ntBASIC0.13□□□□□ -2.39
CCDC3Q9BQI4 RNU7-195P-201ENST00000458793 62 ntBASIC0.13□□□□□ -2.39
CCDC3Q9BQI4 RNU7-104P-201ENST00000459398 79 ntBASIC0.13□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.703-201ENST00000516846 111 ntBASIC0.13□□□□□ -2.39
CCDC3Q9BQI4 MIR4743-201ENST00000584576 69 ntBASIC0.13□□□□□ -2.39
CCDC3Q9BQI4 AL157777.2-201ENST00000258070 137 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.221-201ENST00000364248 96 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.323-201ENST00000365157 109 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 RNA5SP128-201ENST00000365305 116 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 RNU6-1062P-201ENST00000383908 107 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.423-201ENST00000384057 113 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 RNU6-746P-201ENST00000384112 109 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 RNU6-187P-201ENST00000384139 106 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 MIR548L-201ENST00000408303 86 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 RNU7-74P-201ENST00000459104 62 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 RNU6-1265P-201ENST00000516342 103 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 U7.6-201ENST00000610841 64 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 AL162726.3-218ENST00000636401 95 ntBASIC0.12□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.173-201ENST00000363776 113 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.377-201ENST00000365644 108 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 SNORA7.5-201ENST00000410672 110 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 RNU7-106P-201ENST00000459514 67 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 MTND5P40-201ENST00000559945 246 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 MIR3920-201ENST00000581751 86 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 RNU6-90P-201ENST00000606352 106 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 MIR3914-2-201ENST00000637339 95 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 AL512310.12-203ENST00000640543 90 ntBASIC0.11□□□□□ -2.39
CCDC3Q9BQI4 SNORD115-44-201ENST00000365391 82 ntBASIC0.1□□□□□ -2.39
CCDC3Q9BQI4 MIR548G-201ENST00000408442 89 ntBASIC0.1□□□□□ -2.39
CCDC3Q9BQI4 Y_RNA.630-201ENST00000411370 108 ntBASIC0.1□□□□□ -2.39
CCDC3Q9BQI4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.1□□□□□ -2.39
CCDC3Q9BQI4 RNU6-1211P-201ENST00000459179 105 ntBASIC0.1□□□□□ -2.39
CCDC3Q9BQI4 MIR5190-201ENST00000581537 80 ntBASIC0.1□□□□□ -2.39
CCDC3Q9BQI4 uc_338.28-201ENST00000612082 187 ntBASIC0.1□□□□□ -2.39
CCDC3Q9BQI4 RNU6-509P-201ENST00000363519 107 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.309-201ENST00000365046 111 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 196.5 ms