Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 Y_RNA.32-201ENST00000362589 110 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 SNORD116-22-201ENST00000384430 92 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 RNU6-939P-201ENST00000384634 107 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 Y_RNA.558-201ENST00000384685 113 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 MIR1323-201ENST00000408090 73 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 RNU6-519P-201ENST00000410590 108 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 AL161932.1-201ENST00000437408 146 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 RNA5SP255-201ENST00000516370 107 ntBASIC1.2□□□□□ -2.22
CCDC140Q96MF4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC140Q96MF4 Y_RNA.17-201ENST00000362433 111 ntBASIC1.19□□□□□ -2.22
CCDC140Q96MF4 Y_RNA.221-201ENST00000364248 96 ntBASIC1.19□□□□□ -2.22
CCDC140Q96MF4 SNORD73B-201ENST00000364394 72 ntBASIC1.19□□□□□ -2.22
CCDC140Q96MF4 RNU6-402P-201ENST00000410678 103 ntBASIC1.19□□□□□ -2.22
CCDC140Q96MF4 AC002350.1-201ENST00000490759 375 ntBASIC1.19□□□□□ -2.22
CCDC140Q96MF4 snoU13.31-201ENST00000607291 104 ntBASIC1.19□□□□□ -2.22
CCDC140Q96MF4 MIR599-201ENST00000385069 95 ntBASIC1.18□□□□□ -2.22
CCDC140Q96MF4 SNORD99-201ENST00000408612 74 ntBASIC1.18□□□□□ -2.22
CCDC140Q96MF4 RNA5SP247-201ENST00000411181 105 ntBASIC1.18□□□□□ -2.22
CCDC140Q96MF4 AL512598.1-201ENST00000610158 273 ntBASIC1.18□□□□□ -2.22
CCDC140Q96MF4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.18□□□□□ -2.22
CCDC140Q96MF4 uc_338.16-201ENST00000621804 95 ntBASIC1.18□□□□□ -2.22
CCDC140Q96MF4 MIR337-201ENST00000362281 93 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 RNU6-957P-201ENST00000363652 99 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 RNU6-524P-201ENST00000384270 107 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 MIR644A-201ENST00000385262 94 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 MIR320A-201ENST00000385302 82 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 RNU4-62P-201ENST00000410125 130 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 RNU6-267P-201ENST00000516714 103 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 SNORD53B-201ENST00000577887 78 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 MIR4668-201ENST00000582284 70 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 IGLL4P-201ENST00000614590 133 ntBASIC1.17□□□□□ -2.22
CCDC140Q96MF4 MIR517C-201ENST00000385103 95 ntBASIC1.16□□□□□ -2.22
CCDC140Q96MF4 MIR1304-201ENST00000408243 91 ntBASIC1.16□□□□□ -2.22
CCDC140Q96MF4 AP1B1P2-201ENST00000416196 106 ntBASIC1.16□□□□□ -2.22
CCDC140Q96MF4 Y_RNA.648-201ENST00000459455 110 ntBASIC1.16□□□□□ -2.22
CCDC140Q96MF4 RNU6-762P-201ENST00000517107 102 ntBASIC1.16□□□□□ -2.22
CCDC140Q96MF4 AC011195.1-201ENST00000578177 177 ntBASIC1.16□□□□□ -2.22
CCDC140Q96MF4 MIR4536-1-201ENST00000583537 88 ntBASIC1.16□□□□□ -2.22
CCDC140Q96MF4 Y_RNA.174-201ENST00000363781 105 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 SNORA67.6-201ENST00000391093 99 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 RNU6-466P-201ENST00000391224 103 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 Y_RNA.593-201ENST00000410292 98 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 RNU6-65P-201ENST00000516332 98 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 SNORA31.24-201ENST00000517232 57 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 MIR3612-201ENST00000579753 87 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 MIR4303-201ENST00000581299 66 ntBASIC1.15□□□□□ -2.23
CCDC140Q96MF4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC140Q96MF4 MIR494-201ENST00000349529 81 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 RNU6-1260P-201ENST00000362944 107 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 RNY1P10-201ENST00000363268 113 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 Y_RNA.191-201ENST00000363972 113 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 MIR573-201ENST00000384964 99 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 AL354695.1-201ENST00000427935 228 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 AC097635.1-201ENST00000450678 155 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 RNU7-85P-201ENST00000458851 63 ntBASIC1.14□□□□□ -2.23
CCDC140Q96MF4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC140Q96MF4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC140Q96MF4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
CCDC140Q96MF4 RNU4-32P-201ENST00000363404 141 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 RNU1-42P-201ENST00000364033 160 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 RNY1P1-201ENST00000364372 112 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 Y_RNA.283-201ENST00000364798 112 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 MIR450A2-201ENST00000385022 100 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 MIR519A1-201ENST00000385257 85 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 AL606490.4-201ENST00000423117 127 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 SNORD4B-201ENST00000459083 72 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 TRMT112P2-201ENST00000512910 132 ntBASIC1.13□□□□□ -2.23
CCDC140Q96MF4 SNORD115-24-201ENST00000363528 82 ntBASIC1.12□□□□□ -2.23
CCDC140Q96MF4 RNU6-321P-201ENST00000410912 106 ntBASIC1.12□□□□□ -2.23
CCDC140Q96MF4 RNU6-469P-201ENST00000516253 101 ntBASIC1.12□□□□□ -2.23
CCDC140Q96MF4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC140Q96MF4 MIR150-201ENST00000385048 84 ntBASIC1.11□□□□□ -2.23
CCDC140Q96MF4 Y_RNA.620-201ENST00000411009 88 ntBASIC1.11□□□□□ -2.23
CCDC140Q96MF4 AC244505.6-201ENST00000452829 130 ntBASIC1.11□□□□□ -2.23
CCDC140Q96MF4 OR2A41P-201ENST00000473586 105 ntBASIC1.11□□□□□ -2.23
CCDC140Q96MF4 TRDV1-202ENST00000621643 102 ntBASIC1.11□□□□□ -2.23
CCDC140Q96MF4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.11□□□□□ -2.23
CCDC140Q96MF4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CCDC140Q96MF4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
CCDC140Q96MF4 Y_RNA.226-201ENST00000364337 114 ntBASIC1.1□□□□□ -2.23
CCDC140Q96MF4 RNU7-95P-201ENST00000459222 64 ntBASIC1.1□□□□□ -2.23
CCDC140Q96MF4 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.1□□□□□ -2.23
CCDC140Q96MF4 AC062037.1-201ENST00000605302 128 ntBASIC1.1□□□□□ -2.23
CCDC140Q96MF4 Y_RNA.73-201ENST00000362910 113 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 RNU6-219P-201ENST00000364728 107 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CCDC140Q96MF4 SNORA26.2-201ENST00000390922 122 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 MIR1287-201ENST00000408492 90 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 RNA5SP222-201ENST00000411039 105 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 AC244098.3-201ENST00000424803 96 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.09□□□□□ -2.23
CCDC140Q96MF4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.09□□□□□ -2.23
CCDC140Q96MF4 RNA5SP61-201ENST00000516453 100 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 MIR3678-201ENST00000578455 94 ntBASIC1.09□□□□□ -2.23
CCDC140Q96MF4 SNORD115-27-201ENST00000364430 82 ntBASIC1.08□□□□□ -2.24
CCDC140Q96MF4 MIR4661-201ENST00000582720 75 ntBASIC1.08□□□□□ -2.24
CCDC140Q96MF4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.08□□□□□ -2.24
CCDC140Q96MF4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.08□□□□□ -2.24
CCDC140Q96MF4 Y_RNA.611-201ENST00000410682 108 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms