Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
ERCC4Q92889 SNORD100-201ENST00000408573 76 ntBASIC1.23□□□□□ -2.21
ERCC4Q92889 U7.7-201ENST00000459276 60 ntBASIC1.23□□□□□ -2.21
ERCC4Q92889 SNORD124-201ENST00000459577 104 ntBASIC1.23□□□□□ -2.21
ERCC4Q92889 AP003327.1-201ENST00000529684 127 ntBASIC1.23□□□□□ -2.21
ERCC4Q92889 AC103810.7-201ENST00000607821 91 ntBASIC1.23□□□□□ -2.21
ERCC4Q92889 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.23□□□□□ -2.21
ERCC4Q92889 Y_RNA.56-201ENST00000362798 112 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 RNU6-1255P-201ENST00000363434 112 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 RNU6-1125P-201ENST00000363601 107 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 SNORD58A-201ENST00000383875 65 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 RNU6-49P-201ENST00000384256 107 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 RNU6-480P-201ENST00000384332 107 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 RNU6-364P-201ENST00000384387 107 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 RNY4P30-201ENST00000410216 95 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 SNORD114-21-201ENST00000606412 72 ntBASIC1.22□□□□□ -2.21
ERCC4Q92889 RNU6-42P-201ENST00000384165 107 ntBASIC1.21□□□□□ -2.22
ERCC4Q92889 MIR181B2-201ENST00000385004 89 ntBASIC1.21□□□□□ -2.22
ERCC4Q92889 MIR519A1-201ENST00000385257 85 ntBASIC1.21□□□□□ -2.22
ERCC4Q92889 RNA5SP220-201ENST00000516298 104 ntBASIC1.21□□□□□ -2.22
ERCC4Q92889 MIR4295-201ENST00000585286 85 ntBASIC1.21□□□□□ -2.22
ERCC4Q92889 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.21□□□□□ -2.22
ERCC4Q92889 RNU6-1131P-201ENST00000364955 107 ntBASIC1.2□□□□□ -2.22
ERCC4Q92889 MIR520F-201ENST00000384824 87 ntBASIC1.2□□□□□ -2.22
ERCC4Q92889 MIR1276-201ENST00000408707 83 ntBASIC1.2□□□□□ -2.22
ERCC4Q92889 RNU6-448P-201ENST00000517052 107 ntBASIC1.2□□□□□ -2.22
ERCC4Q92889 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
ERCC4Q92889 SNORD116-10-201ENST00000363791 102 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 Y_RNA.220-201ENST00000364244 109 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 SNORD114-24-201ENST00000365029 72 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 Y_RNA.536-201ENST00000384621 113 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 RNU1-119P-201ENST00000391122 165 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 MIR548H5-201ENST00000580314 60 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 AL136317.1-201ENST00000612653 226 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 AC025521.1-201ENST00000621624 286 ntBASIC1.19□□□□□ -2.22
ERCC4Q92889 MIR101-2-201ENST00000362195 79 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 Y_RNA.57-201ENST00000362806 113 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 RNU6-291P-201ENST00000384720 107 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 RNY1P7-201ENST00000384743 110 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 SNORD89-201ENST00000390981 114 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 TRAJ51-201ENST00000504127 63 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 Y_RNA.697-201ENST00000516776 113 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 RNU6-844P-201ENST00000517175 102 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 AL513043.2-201ENST00000573941 143 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 MIR4452-201ENST00000583004 71 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 AC103810.9-201ENST00000606688 112 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 RNU7-10P-201ENST00000607194 63 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 MIR6734-201ENST00000621166 68 ntBASIC1.18□□□□□ -2.22
ERCC4Q92889 SNORD36A-201ENST00000362874 73 ntBASIC1.17□□□□□ -2.22
ERCC4Q92889 MIR942-201ENST00000401111 86 ntBASIC1.17□□□□□ -2.22
ERCC4Q92889 SNORD63B-201ENST00000411005 70 ntBASIC1.17□□□□□ -2.22
ERCC4Q92889 RNU7-106P-201ENST00000459514 67 ntBASIC1.17□□□□□ -2.22
ERCC4Q92889 RNU6-162P-201ENST00000516228 103 ntBASIC1.17□□□□□ -2.22
ERCC4Q92889 Y_RNA.190-201ENST00000363964 101 ntBASIC1.16□□□□□ -2.22
ERCC4Q92889 MIR635-201ENST00000384830 98 ntBASIC1.16□□□□□ -2.22
ERCC4Q92889 MIR516A2-201ENST00000384888 90 ntBASIC1.16□□□□□ -2.22
ERCC4Q92889 MIR516A1-201ENST00000385033 90 ntBASIC1.16□□□□□ -2.22
ERCC4Q92889 SNORD105-201ENST00000386910 85 ntBASIC1.16□□□□□ -2.22
ERCC4Q92889 AC092628.1-201ENST00000436250 252 ntBASIC1.16□□□□□ -2.22
ERCC4Q92889 RNA5SP255-201ENST00000516370 107 ntBASIC1.16□□□□□ -2.22
ERCC4Q92889 RNU6-1335P-201ENST00000365426 107 ntBASIC1.15□□□□□ -2.23
ERCC4Q92889 MIR520H-201ENST00000385126 88 ntBASIC1.15□□□□□ -2.23
ERCC4Q92889 RNU6-1254P-201ENST00000391266 104 ntBASIC1.15□□□□□ -2.23
ERCC4Q92889 RNA5SP102-201ENST00000516865 106 ntBASIC1.15□□□□□ -2.23
ERCC4Q92889 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.15□□□□□ -2.23
ERCC4Q92889 uc_338.16-201ENST00000621804 95 ntBASIC1.15□□□□□ -2.23
ERCC4Q92889 RNU6-1187P-201ENST00000364771 110 ntBASIC1.14□□□□□ -2.23
ERCC4Q92889 RNU6-535P-201ENST00000384722 107 ntBASIC1.14□□□□□ -2.23
ERCC4Q92889 AC087343.1-201ENST00000477341 475 ntBASIC1.14□□□□□ -2.23
ERCC4Q92889 RNA5SP245-201ENST00000364239 121 ntBASIC1.13□□□□□ -2.23
ERCC4Q92889 AC026421.1-201ENST00000519101 163 ntBASIC1.13□□□□□ -2.23
ERCC4Q92889 AC138907.6-201ENST00000568401 126 ntBASIC1.13□□□□□ -2.23
ERCC4Q92889 AC138869.1-201ENST00000568623 124 ntBASIC1.13□□□□□ -2.23
ERCC4Q92889 AC025627.3-201ENST00000582078 182 ntBASIC1.13□□□□□ -2.23
ERCC4Q92889 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
ERCC4Q92889 RNU6-1260P-201ENST00000362944 107 ntBASIC1.12□□□□□ -2.23
ERCC4Q92889 RNU6-294P-201ENST00000364999 102 ntBASIC1.12□□□□□ -2.23
ERCC4Q92889 AC097635.1-201ENST00000450678 155 ntBASIC1.12□□□□□ -2.23
ERCC4Q92889 AC244505.6-201ENST00000452829 130 ntBASIC1.12□□□□□ -2.23
ERCC4Q92889 Y_RNA.648-201ENST00000459455 110 ntBASIC1.12□□□□□ -2.23
ERCC4Q92889 AC002350.1-201ENST00000490759 375 ntBASIC1.12□□□□□ -2.23
ERCC4Q92889 RNU4-38P-201ENST00000364472 129 ntBASIC1.11□□□□□ -2.23
ERCC4Q92889 RNU7-195P-201ENST00000458793 62 ntBASIC1.11□□□□□ -2.23
ERCC4Q92889 SNORA31.14-201ENST00000516728 116 ntBASIC1.11□□□□□ -2.23
ERCC4Q92889 MIR4661-201ENST00000582720 75 ntBASIC1.11□□□□□ -2.23
ERCC4Q92889 Y_RNA.32-201ENST00000362589 110 ntBASIC1.1□□□□□ -2.23
ERCC4Q92889 Y_RNA.174-201ENST00000363781 105 ntBASIC1.1□□□□□ -2.23
ERCC4Q92889 MIR573-201ENST00000384964 99 ntBASIC1.1□□□□□ -2.23
ERCC4Q92889 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.1□□□□□ -2.23
ERCC4Q92889 MIR489-201ENST00000384923 84 ntBASIC1.09□□□□□ -2.23
ERCC4Q92889 RNU6-243P-201ENST00000391140 107 ntBASIC1.09□□□□□ -2.23
ERCC4Q92889 RPL39P28-201ENST00000465655 155 ntBASIC1.09□□□□□ -2.23
ERCC4Q92889 AC006254.2-201ENST00000603259 279 ntBASIC1.09□□□□□ -2.23
ERCC4Q92889 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.09□□□□□ -2.23
ERCC4Q92889 Y_RNA.809-201ENST00000516058 95 ntBASIC1.08□□□□□ -2.24
ERCC4Q92889 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
ERCC4Q92889 Y_RNA.558-201ENST00000384685 113 ntBASIC1.07□□□□□ -2.24
ERCC4Q92889 RNU7-85P-201ENST00000458851 63 ntBASIC1.07□□□□□ -2.24
ERCC4Q92889 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 264.3 ms