Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPS29P23-201ENST00000458635 123 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 MIR8063-201ENST00000621930 81 ntBASIC1.5□□□□□ -2.17
USP39Q53GS9 RNU1-36P-201ENST00000365130 165 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 MIR18B-201ENST00000454574 71 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 RNU1-123P-201ENST00000458950 160 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 snoU13.21-201ENST00000459368 105 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 AC139453.2-201ENST00000487255 133 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 RNU6-902P-201ENST00000517212 91 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 MIR4796-201ENST00000580742 81 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 AC145423.2-201ENST00000610631 239 ntBASIC1.49□□□□□ -2.17
USP39Q53GS9 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.49□□□□□ -2.17
USP39Q53GS9 Y_RNA.283-201ENST00000364798 112 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 RNU6-132P-201ENST00000383863 107 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 RNU6-955P-201ENST00000410497 104 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 AL354695.1-201ENST00000427935 228 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 RNU6-557P-201ENST00000516842 110 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 AC019176.1-201ENST00000518519 225 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 MIR4452-201ENST00000583004 71 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.48□□□□□ -2.17
USP39Q53GS9 RNU6-811P-201ENST00000384069 107 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 MIR320A-201ENST00000385302 82 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 SNORD93-201ENST00000408813 74 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 SNORD63B-201ENST00000411005 70 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 AC073261.1-201ENST00000429409 121 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 MIR3664-201ENST00000579074 99 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 MIR4536-1-201ENST00000583537 88 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 MIR6078-201ENST00000611069 100 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 Y_RNA.788-201ENST00000622394 112 ntBASIC1.47□□□□□ -2.17
USP39Q53GS9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USP39Q53GS9 SNORA63.2-201ENST00000362603 126 ntBASIC1.46□□□□□ -2.18
USP39Q53GS9 SNORD33-201ENST00000362761 85 ntBASIC1.46□□□□□ -2.18
USP39Q53GS9 RNU4-58P-201ENST00000363192 141 ntBASIC1.46□□□□□ -2.18
USP39Q53GS9 RNU6-243P-201ENST00000391140 107 ntBASIC1.46□□□□□ -2.18
USP39Q53GS9 SNORA18.5-201ENST00000516616 101 ntBASIC1.46□□□□□ -2.18
USP39Q53GS9 RNA5SP102-201ENST00000516865 106 ntBASIC1.46□□□□□ -2.18
USP39Q53GS9 MIR3064-201ENST00000581130 66 ntBASIC1.46□□□□□ -2.18
USP39Q53GS9 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
USP39Q53GS9 MIRLET7A1-201ENST00000362295 80 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 RNU6-957P-201ENST00000363652 99 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 SNORD26-201ENST00000384147 75 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 RNU6-42P-201ENST00000384165 107 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 Y_RNA.565-201ENST00000384719 101 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 SNORD100-201ENST00000408573 76 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 TRAJ51-201ENST00000504127 63 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 AC079140.2-201ENST00000506193 142 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 RNU6-1194P-201ENST00000516208 104 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 RNU6-523P-201ENST00000516304 54 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 AC104996.3-201ENST00000590718 94 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 AL078603.1-201ENST00000603824 313 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 U7.4-201ENST00000614961 63 ntBASIC1.45□□□□□ -2.18
USP39Q53GS9 MIR520H-201ENST00000385126 88 ntBASIC1.44□□□□□ -2.18
USP39Q53GS9 RNU7-185P-201ENST00000459215 60 ntBASIC1.44□□□□□ -2.18
USP39Q53GS9 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.44□□□□□ -2.18
USP39Q53GS9 AC013244.2-201ENST00000603396 103 ntBASIC1.44□□□□□ -2.18
USP39Q53GS9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.44□□□□□ -2.18
USP39Q53GS9 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
USP39Q53GS9 RNU6-403P-201ENST00000363163 104 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 SNORD90-201ENST00000391145 111 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 RNU6-1054P-201ENST00000411293 104 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 SCARNA18B-201ENST00000458806 135 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 AC004223.1-201ENST00000479840 271 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 RNA5SP220-201ENST00000516298 104 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 AL512310.8-201ENST00000550183 120 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.43□□□□□ -2.18
USP39Q53GS9 AC023934.1-201ENST00000574529 2389 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 MIRLET7F1-201ENST00000362202 87 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 Y_RNA.13-201ENST00000362403 112 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 RNU6-1094P-201ENST00000362416 104 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 RNU6-161P-201ENST00000363051 106 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 RNU6-686P-201ENST00000364839 107 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 RNU6-53P-201ENST00000365367 106 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 Y_RNA.532-201ENST00000384590 113 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 Y_RNA.536-201ENST00000384621 113 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 MIR519A1-201ENST00000385257 85 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 SNORD83.1-201ENST00000411362 77 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 RNU7-195P-201ENST00000458793 62 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 AC048334.1-201ENST00000477975 159 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 AC036111.3-201ENST00000526389 112 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 SNORD92-201ENST00000585078 85 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 MIR6082-201ENST00000613604 109 ntBASIC1.42□□□□□ -2.18
USP39Q53GS9 Y_RNA.363-201ENST00000365529 113 ntBASIC1.41□□□□□ -2.18
USP39Q53GS9 Y_RNA.491-201ENST00000384417 107 ntBASIC1.41□□□□□ -2.18
USP39Q53GS9 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
USP39Q53GS9 RNU6-466P-201ENST00000391224 103 ntBASIC1.41□□□□□ -2.18
USP39Q53GS9 AL606490.4-201ENST00000423117 127 ntBASIC1.41□□□□□ -2.18
USP39Q53GS9 AC015818.7-201ENST00000428754 109 ntBASIC1.41□□□□□ -2.18
USP39Q53GS9 RNU6-1108P-201ENST00000516308 104 ntBASIC1.41□□□□□ -2.18
USP39Q53GS9 MIR3937-201ENST00000580135 106 ntBASIC1.41□□□□□ -2.18
USP39Q53GS9 MIR635-201ENST00000384830 98 ntBASIC1.4□□□□□ -2.19
USP39Q53GS9 SNORA75.2-201ENST00000391138 150 ntBASIC1.4□□□□□ -2.19
USP39Q53GS9 SNORA75.3-201ENST00000391231 150 ntBASIC1.4□□□□□ -2.19
USP39Q53GS9 RPS27P16-201ENST00000425758 201 ntBASIC1.4□□□□□ -2.19
USP39Q53GS9 FGF7P7-201ENST00000514120 227 ntBASIC1.4□□□□□ -2.19
USP39Q53GS9 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.4□□□□□ -2.19
USP39Q53GS9 MIR6734-201ENST00000621166 68 ntBASIC1.4□□□□□ -2.19
USP39Q53GS9 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
USP39Q53GS9 Y_RNA.42-201ENST00000362660 108 ntBASIC1.39□□□□□ -2.19
USP39Q53GS9 Y_RNA.56-201ENST00000362798 112 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms