Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.42□□□□□ -2.18
COL4A3Q01955 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
COL4A3Q01955 RNU1-78P-201ENST00000391248 165 ntBASIC1.41□□□□□ -2.18
COL4A3Q01955 SNORD93-201ENST00000408813 74 ntBASIC1.41□□□□□ -2.18
COL4A3Q01955 AL627230.6-201ENST00000611129 280 ntBASIC1.41□□□□□ -2.18
COL4A3Q01955 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.41□□□□□ -2.18
COL4A3Q01955 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.4□□□□□ -2.18
COL4A3Q01955 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.4□□□□□ -2.18
COL4A3Q01955 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.4□□□□□ -2.18
COL4A3Q01955 MIR302D-201ENST00000362275 68 ntBASIC1.4□□□□□ -2.19
COL4A3Q01955 RNU6-654P-201ENST00000364373 107 ntBASIC1.4□□□□□ -2.19
COL4A3Q01955 MIR519C-201ENST00000385053 87 ntBASIC1.4□□□□□ -2.19
COL4A3Q01955 RNU6-519P-201ENST00000410590 108 ntBASIC1.4□□□□□ -2.19
COL4A3Q01955 RNU6-1054P-201ENST00000411293 104 ntBASIC1.4□□□□□ -2.19
COL4A3Q01955 AC023790.1-201ENST00000482174 347 ntBASIC1.4□□□□□ -2.19
COL4A3Q01955 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
COL4A3Q01955 RNU6-652P-201ENST00000365488 107 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 RNU6-716P-201ENST00000365621 103 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 RNU6-571P-201ENST00000384128 107 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 RNU6-524P-201ENST00000384270 107 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 RNU6-1065P-201ENST00000384513 106 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 RNA5SP233-201ENST00000459153 113 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 RNU4-58P-201ENST00000363192 141 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 AC093729.1-201ENST00000513074 128 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 AC068338.1-201ENST00000565567 176 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 MIR5000-201ENST00000577717 103 ntBASIC1.39□□□□□ -2.19
COL4A3Q01955 MIR377-201ENST00000362145 69 ntBASIC1.38□□□□□ -2.19
COL4A3Q01955 SNORD115-37-201ENST00000363768 82 ntBASIC1.38□□□□□ -2.19
COL4A3Q01955 SNORD115-27-201ENST00000364430 82 ntBASIC1.38□□□□□ -2.19
COL4A3Q01955 RNA5SP95-201ENST00000410319 137 ntBASIC1.38□□□□□ -2.19
COL4A3Q01955 RNA5SP225-201ENST00000410874 135 ntBASIC1.38□□□□□ -2.19
COL4A3Q01955 RNA5SP330-201ENST00000517096 96 ntBASIC1.38□□□□□ -2.19
COL4A3Q01955 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.38□□□□□ -2.19
COL4A3Q01955 uc_338.6-201ENST00000613544 171 ntBASIC1.38□□□□□ -2.19
COL4A3Q01955 AC008163.1-202ENST00000636004 2889 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 RNU6-403P-201ENST00000363163 104 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 SNORD113.3-201ENST00000364630 78 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 RNU1-36P-201ENST00000365130 165 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 MIR1236-201ENST00000408340 102 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 SNORD4B-201ENST00000459083 72 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 RNU6-531P-201ENST00000516694 104 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.37□□□□□ -2.19
COL4A3Q01955 SNORD36A-201ENST00000362874 73 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 RNU6-934P-201ENST00000365154 107 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 Y_RNA.330-201ENST00000365230 109 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 MIR516A2-201ENST00000384888 90 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 MIR516A1-201ENST00000385033 90 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
COL4A3Q01955 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
COL4A3Q01955 AC048334.1-201ENST00000477975 159 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 SNORA25.16-201ENST00000516741 121 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 RNU6-165P-201ENST00000517170 99 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 AL512310.8-201ENST00000550183 120 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 MIR3198-2-201ENST00000577868 80 ntBASIC1.36□□□□□ -2.19
COL4A3Q01955 MIR4536-1-201ENST00000583537 88 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 AL590095.2-201ENST00000604136 117 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 MIR635-201ENST00000384830 98 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 RNU6-243P-201ENST00000391140 107 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 RNU6-1254P-201ENST00000391266 104 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 RNU6-279P-201ENST00000391297 101 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 AL356379.1-201ENST00000414105 126 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 AC087499.7-201ENST00000441958 109 ntBASIC1.35□□□□□ -2.19
COL4A3Q01955 AC023934.1-201ENST00000574529 2389 ntBASIC1.34□□□□□ -2.19
COL4A3Q01955 Y_RNA.244-201ENST00000364484 109 ntBASIC1.34□□□□□ -2.19
COL4A3Q01955 SNRPGP12-201ENST00000449481 213 ntBASIC1.34□□□□□ -2.19
COL4A3Q01955 RNU7-185P-201ENST00000459215 60 ntBASIC1.34□□□□□ -2.19
COL4A3Q01955 snoU13.21-201ENST00000459368 105 ntBASIC1.34□□□□□ -2.19
COL4A3Q01955 RNA5SP121-201ENST00000516537 101 ntBASIC1.34□□□□□ -2.19
COL4A3Q01955 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.34□□□□□ -2.19
COL4A3Q01955 MIR101-2-201ENST00000362195 79 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 SNORA40.6-201ENST00000391153 128 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 Y_RNA.588-201ENST00000391254 102 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 RNU7-106P-201ENST00000459514 67 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 RN7SKP88-201ENST00000516847 250 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 MIR4422-201ENST00000581938 83 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 AC013244.2-201ENST00000603396 103 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 7SK.8-201ENST00000612110 250 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 7SK.11-201ENST00000615477 250 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 7SK.13-201ENST00000622040 250 ntBASIC1.33□□□□□ -2.2
COL4A3Q01955 RNU6-35P-201ENST00000384530 107 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 MIR222-201ENST00000384992 110 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 SNORD111-201ENST00000408139 94 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 Y_RNA.648-201ENST00000459455 110 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 RNU6-857P-201ENST00000515893 110 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 RNU7-153P-201ENST00000516455 62 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 MIR514B-201ENST00000516774 80 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 RNU4-32P-201ENST00000363404 141 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 RNU6-24P-201ENST00000384440 107 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 SNORA72.6-201ENST00000384520 129 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 MIR676-201ENST00000390702 67 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 RNU7-85P-201ENST00000458851 63 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 AC140658.3-201ENST00000567603 271 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 AL096840.1-201ENST00000603287 93 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 AL109933.3-201ENST00000619095 188 ntBASIC1.32□□□□□ -2.2
COL4A3Q01955 RPS27P16-201ENST00000425758 201 ntBASIC1.31□□□□□ -2.2
COL4A3Q01955 snoU13.11-201ENST00000459219 104 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 350.3 ms