Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU6-1268P-201ENST00000391214 107 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 RNU6-1239P-201ENST00000391310 107 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.61□□□□□ -2.31
HDAC4P56524 RPL39P34-201ENST00000477141 156 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 RNU4-54P-201ENST00000516428 129 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 RNU6-406P-201ENST00000516470 107 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 RNA5SP94-201ENST00000516917 108 ntBASIC0.61□□□□□ -2.31
HDAC4P56524 SNORA36.1-201ENST00000363424 132 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 Y_RNA.174-201ENST00000363781 105 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 RNA5SP205-201ENST00000364653 136 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 RNU6-1117P-201ENST00000384525 104 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 MIR548A3-201ENST00000385297 97 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 RNU6-469P-201ENST00000516253 101 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 AC018659.1-201ENST00000551083 169 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 AL670379.3-201ENST00000605040 251 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 uc_338.17-201ENST00000619633 179 ntBASIC0.6□□□□□ -2.31
HDAC4P56524 RNA5SP499-201ENST00000363982 119 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 RNU6-945P-201ENST00000383947 107 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 MIR92A1-201ENST00000385233 78 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 RNU4-61P-201ENST00000411243 107 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 AC092628.1-201ENST00000436250 252 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 SNRPGP12-201ENST00000449481 213 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 TRAJ51-201ENST00000504127 63 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 RNU6-1018P-201ENST00000516577 106 ntBASIC0.59□□□□□ -2.31
HDAC4P56524 MIR101-2-201ENST00000362195 79 ntBASIC0.58□□□□□ -2.32
HDAC4P56524 RNA5SP517-201ENST00000364724 117 ntBASIC0.58□□□□□ -2.32
HDAC4P56524 RNU6-409P-201ENST00000384114 104 ntBASIC0.58□□□□□ -2.32
HDAC4P56524 RNU6-1201P-201ENST00000384227 107 ntBASIC0.58□□□□□ -2.32
HDAC4P56524 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.58□□□□□ -2.32
HDAC4P56524 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
HDAC4P56524 Y_RNA.155-201ENST00000363632 101 ntBASIC0.57□□□□□ -2.32
HDAC4P56524 Y_RNA.507-201ENST00000384500 99 ntBASIC0.57□□□□□ -2.32
HDAC4P56524 MIR1912-201ENST00000410389 80 ntBASIC0.57□□□□□ -2.32
HDAC4P56524 AC244505.6-201ENST00000452829 130 ntBASIC0.57□□□□□ -2.32
HDAC4P56524 RNU6-479P-201ENST00000516348 105 ntBASIC0.57□□□□□ -2.32
HDAC4P56524 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
HDAC4P56524 Y_RNA.35-201ENST00000362601 101 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 Y_RNA.281-201ENST00000364774 94 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 U8.6-201ENST00000364939 135 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 SNORD28-201ENST00000384706 75 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 MIR577-201ENST00000385196 96 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 SNORA62.5-201ENST00000516634 120 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 RNU6-135P-201ENST00000516769 101 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 AC068339.1-201ENST00000526965 141 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 MIR548H5-201ENST00000580314 60 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 AL512310.12-203ENST00000640543 90 ntBASIC0.56□□□□□ -2.32
HDAC4P56524 Y_RNA.309-201ENST00000365046 111 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 RNU6-571P-201ENST00000384128 107 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 RNU6-1144P-201ENST00000384247 104 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 Y_RNA.567-201ENST00000384736 106 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 MIR548I2-201ENST00000408348 149 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 AL606753.1-201ENST00000427435 87 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 RNU6-62P-201ENST00000516526 102 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 RNU6-850P-201ENST00000516934 103 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 RNA5SP47-201ENST00000517230 109 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 MIR3613-201ENST00000579844 87 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 AC092634.7-201ENST00000621022 103 ntBASIC0.55□□□□□ -2.32
HDAC4P56524 SNORD116-21-201ENST00000384507 92 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 RNU6-1154P-201ENST00000391001 104 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 AL157398.1-201ENST00000452981 186 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 RNU7-106P-201ENST00000459514 67 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 RN7SKP12-201ENST00000516275 143 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 RNU6-789P-201ENST00000517105 102 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 MIR5009-201ENST00000578736 100 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 AL442128.1-201ENST00000615151 90 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.54□□□□□ -2.32
HDAC4P56524 MIR6828-201ENST00000636181 60 ntBASIC0.54□□□□□ -2.32
HDAC4P56524 Y_RNA.377-201ENST00000365644 108 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 SNORA8.2-201ENST00000384372 139 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 RNU6-880P-201ENST00000384526 107 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 RNU6-476P-201ENST00000384726 107 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 MIR635-201ENST00000384830 98 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 SNORD63B-201ENST00000411005 70 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 AC138869.1-201ENST00000568623 124 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 MIR4639-201ENST00000584938 69 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 AC243829.6-201ENST00000612652 106 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 AC244669.1-204ENST00000621564 178 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 MIR6086-201ENST00000638065 55 ntBASIC0.53□□□□□ -2.32
HDAC4P56524 RNU6-170P-201ENST00000362832 104 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 Y_RNA.173-201ENST00000363776 113 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 SNORD38.1-201ENST00000363863 68 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 Y_RNA.323-201ENST00000365157 109 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 SNORA19-201ENST00000384737 128 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 MIR519A1-201ENST00000385257 85 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 MIR548G-201ENST00000408442 89 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 RNU6-1064P-201ENST00000410626 104 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 RNU2-51P-201ENST00000410708 197 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 RNU6-313P-201ENST00000516317 112 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 RNA5SP285-201ENST00000516619 119 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 SCARNA16.5-201ENST00000517114 183 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 RNU7-161P-201ENST00000517289 62 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 MIR4694-201ENST00000578534 80 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 MIR6129-201ENST00000616087 109 ntBASIC0.52□□□□□ -2.33
HDAC4P56524 RNU6-1099P-201ENST00000363533 107 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 SNORD118-201ENST00000363593 134 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 RNU6-1229P-201ENST00000364295 107 ntBASIC0.51□□□□□ -2.33
HDAC4P56524 VTRNA1-3-201ENST00000365645 89 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 182.8 ms