Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR519A1-201ENST00000385257 85 ntBASIC1.49□□□□□ -2.17
LIG3P49916 AP1B1P2-201ENST00000416196 106 ntBASIC1.49□□□□□ -2.17
LIG3P49916 RNU7-106P-201ENST00000459514 67 ntBASIC1.49□□□□□ -2.17
LIG3P49916 AC019288.1-201ENST00000557918 224 ntBASIC1.49□□□□□ -2.17
LIG3P49916 Y_RNA.388-201ENST00000383919 113 ntBASIC1.48□□□□□ -2.17
LIG3P49916 AL354695.1-201ENST00000427935 228 ntBASIC1.48□□□□□ -2.17
LIG3P49916 AC092628.1-201ENST00000436250 252 ntBASIC1.48□□□□□ -2.17
LIG3P49916 RNU7-95P-201ENST00000459222 64 ntBASIC1.48□□□□□ -2.17
LIG3P49916 RNU6-448P-201ENST00000517052 107 ntBASIC1.48□□□□□ -2.17
LIG3P49916 MIR4498-201ENST00000577599 66 ntBASIC1.48□□□□□ -2.17
LIG3P49916 AL359821.1-201ENST00000605519 182 ntBASIC1.48□□□□□ -2.17
LIG3P49916 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.48□□□□□ -2.17
LIG3P49916 AL157834.3-201ENST00000615543 103 ntBASIC1.48□□□□□ -2.17
LIG3P49916 RNU6-535P-201ENST00000384722 107 ntBASIC1.47□□□□□ -2.17
LIG3P49916 MIR200A-201ENST00000384875 90 ntBASIC1.47□□□□□ -2.17
LIG3P49916 RNU6-1053P-201ENST00000515930 101 ntBASIC1.47□□□□□ -2.17
LIG3P49916 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.47□□□□□ -2.17
LIG3P49916 AC138907.6-201ENST00000568401 126 ntBASIC1.47□□□□□ -2.17
LIG3P49916 AC138869.1-201ENST00000568623 124 ntBASIC1.47□□□□□ -2.17
LIG3P49916 AC008608.1-201ENST00000603910 127 ntBASIC1.47□□□□□ -2.17
LIG3P49916 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.47□□□□□ -2.17
LIG3P49916 RMST_2.1-201ENST00000617263 136 ntBASIC1.47□□□□□ -2.17
LIG3P49916 SNORA25.8-201ENST00000364831 128 ntBASIC1.46□□□□□ -2.18
LIG3P49916 RNU6-291P-201ENST00000384720 107 ntBASIC1.46□□□□□ -2.18
LIG3P49916 RNU6-466P-201ENST00000391224 103 ntBASIC1.46□□□□□ -2.18
LIG3P49916 AC097635.1-201ENST00000450678 155 ntBASIC1.46□□□□□ -2.18
LIG3P49916 RNU7-195P-201ENST00000458793 62 ntBASIC1.46□□□□□ -2.18
LIG3P49916 Y_RNA.809-201ENST00000516058 95 ntBASIC1.46□□□□□ -2.18
LIG3P49916 RNU6-1110P-201ENST00000516462 101 ntBASIC1.46□□□□□ -2.18
LIG3P49916 RNU6-267P-201ENST00000516714 103 ntBASIC1.46□□□□□ -2.18
LIG3P49916 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.46□□□□□ -2.18
LIG3P49916 snoU13.31-201ENST00000607291 104 ntBASIC1.46□□□□□ -2.18
LIG3P49916 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.46□□□□□ -2.18
LIG3P49916 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
LIG3P49916 MIR150-201ENST00000385048 84 ntBASIC1.45□□□□□ -2.18
LIG3P49916 SNORD89-201ENST00000390981 114 ntBASIC1.45□□□□□ -2.18
LIG3P49916 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
LIG3P49916 ZNF209P-201ENST00000593450 2304 ntBASIC1.45□□□□□ -2.18
LIG3P49916 MIR26B-201ENST00000362251 77 ntBASIC1.44□□□□□ -2.18
LIG3P49916 RNU6-633P-201ENST00000362612 103 ntBASIC1.44□□□□□ -2.18
LIG3P49916 RNU6-509P-201ENST00000363519 107 ntBASIC1.44□□□□□ -2.18
LIG3P49916 MIR942-201ENST00000401111 86 ntBASIC1.44□□□□□ -2.18
LIG3P49916 SNORD4B-201ENST00000459083 72 ntBASIC1.44□□□□□ -2.18
LIG3P49916 U7.7-201ENST00000459276 60 ntBASIC1.44□□□□□ -2.18
LIG3P49916 AC022137.1-201ENST00000483735 151 ntBASIC1.44□□□□□ -2.18
LIG3P49916 RNU1-92P-201ENST00000517017 135 ntBASIC1.44□□□□□ -2.18
LIG3P49916 Y_RNA.4-201ENST00000362333 112 ntBASIC1.43□□□□□ -2.18
LIG3P49916 MIR520H-201ENST00000385126 88 ntBASIC1.43□□□□□ -2.18
LIG3P49916 RNU7-85P-201ENST00000458851 63 ntBASIC1.43□□□□□ -2.18
LIG3P49916 snoU13.11-201ENST00000459219 104 ntBASIC1.43□□□□□ -2.18
LIG3P49916 MIR337-201ENST00000362281 93 ntBASIC1.42□□□□□ -2.18
LIG3P49916 Y_RNA.73-201ENST00000362910 113 ntBASIC1.42□□□□□ -2.18
LIG3P49916 RNU6-1260P-201ENST00000362944 107 ntBASIC1.42□□□□□ -2.18
LIG3P49916 Y_RNA.164-201ENST00000363709 102 ntBASIC1.42□□□□□ -2.18
LIG3P49916 Y_RNA.191-201ENST00000363972 113 ntBASIC1.42□□□□□ -2.18
LIG3P49916 Y_RNA.283-201ENST00000364798 112 ntBASIC1.42□□□□□ -2.18
LIG3P49916 RNU6-242P-201ENST00000384359 107 ntBASIC1.42□□□□□ -2.18
LIG3P49916 RNU6-1152P-201ENST00000384576 107 ntBASIC1.42□□□□□ -2.18
LIG3P49916 SNORD124-201ENST00000459577 104 ntBASIC1.42□□□□□ -2.18
LIG3P49916 RNU6-65P-201ENST00000516332 98 ntBASIC1.42□□□□□ -2.18
LIG3P49916 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
LIG3P49916 RNA5SP173-201ENST00000364857 136 ntBASIC1.41□□□□□ -2.18
LIG3P49916 RNA5SP247-201ENST00000411181 105 ntBASIC1.41□□□□□ -2.18
LIG3P49916 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.41□□□□□ -2.18
LIG3P49916 MIR4536-1-201ENST00000583537 88 ntBASIC1.41□□□□□ -2.18
LIG3P49916 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.41□□□□□ -2.18
LIG3P49916 SNORA7.1-201ENST00000363750 139 ntBASIC1.4□□□□□ -2.19
LIG3P49916 Y_RNA.174-201ENST00000363781 105 ntBASIC1.4□□□□□ -2.19
LIG3P49916 RNU1-124P-201ENST00000363861 145 ntBASIC1.4□□□□□ -2.19
LIG3P49916 MIR519C-201ENST00000385053 87 ntBASIC1.4□□□□□ -2.19
LIG3P49916 MIR599-201ENST00000385069 95 ntBASIC1.4□□□□□ -2.19
LIG3P49916 SNORD105-201ENST00000386910 85 ntBASIC1.4□□□□□ -2.19
LIG3P49916 Y_RNA.611-201ENST00000410682 108 ntBASIC1.4□□□□□ -2.19
LIG3P49916 RNA5SP404-201ENST00000517118 132 ntBASIC1.4□□□□□ -2.19
LIG3P49916 AC068338.1-201ENST00000565567 176 ntBASIC1.4□□□□□ -2.19
LIG3P49916 MIR4421-201ENST00000578133 69 ntBASIC1.4□□□□□ -2.19
LIG3P49916 MIR5588-201ENST00000581890 63 ntBASIC1.4□□□□□ -2.19
LIG3P49916 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
LIG3P49916 RNU4-32P-201ENST00000363404 141 ntBASIC1.39□□□□□ -2.19
LIG3P49916 SNORD114-24-201ENST00000365029 72 ntBASIC1.39□□□□□ -2.19
LIG3P49916 MIR548BB-201ENST00000626714 66 ntBASIC1.39□□□□□ -2.19
LIG3P49916 RNU6-957P-201ENST00000363652 99 ntBASIC1.38□□□□□ -2.19
LIG3P49916 RNA5SP245-201ENST00000364239 121 ntBASIC1.38□□□□□ -2.19
LIG3P49916 SNORD115-27-201ENST00000364430 82 ntBASIC1.38□□□□□ -2.19
LIG3P49916 RNU6-497P-201ENST00000365316 104 ntBASIC1.38□□□□□ -2.19
LIG3P49916 Y_RNA.426-201ENST00000384068 113 ntBASIC1.38□□□□□ -2.19
LIG3P49916 Y_RNA.32-201ENST00000362589 110 ntBASIC1.37□□□□□ -2.19
LIG3P49916 SNORD115-37-201ENST00000363768 82 ntBASIC1.37□□□□□ -2.19
LIG3P49916 RNU6-979P-201ENST00000383896 107 ntBASIC1.37□□□□□ -2.19
LIG3P49916 RNU6-524P-201ENST00000384270 107 ntBASIC1.37□□□□□ -2.19
LIG3P49916 MIR758-201ENST00000390227 88 ntBASIC1.37□□□□□ -2.19
LIG3P49916 MIR1236-201ENST00000408340 102 ntBASIC1.37□□□□□ -2.19
LIG3P49916 RNU6-592P-201ENST00000411333 103 ntBASIC1.37□□□□□ -2.19
LIG3P49916 uc_338.16-201ENST00000621804 95 ntBASIC1.37□□□□□ -2.19
LIG3P49916 AC244505.6-201ENST00000452829 130 ntBASIC1.36□□□□□ -2.19
LIG3P49916 SNORA31.14-201ENST00000516728 116 ntBASIC1.36□□□□□ -2.19
LIG3P49916 AC025627.3-201ENST00000582078 182 ntBASIC1.36□□□□□ -2.19
LIG3P49916 TRDV1-202ENST00000621643 102 ntBASIC1.36□□□□□ -2.19
LIG3P49916 RNA5SP117-201ENST00000365294 118 ntBASIC1.35□□□□□ -2.19
LIG3P49916 RNU6-1276P-201ENST00000365372 104 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 189.9 ms