Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.360-201ENST00000365512 102 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 MIR539-201ENST00000365690 78 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 MIR599-201ENST00000385069 95 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 MIR548I1-201ENST00000408810 149 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 RNU2-59P-201ENST00000410482 191 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 AC069271.1-201ENST00000445577 156 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.22□□□□□ -2.37
TNFRSF4P43489 AC108740.1-201ENST00000498629 225 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 TRAJ51-201ENST00000504127 63 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 RNU6-772P-201ENST00000516042 105 ntBASIC0.22□□□□□ -2.37
TNFRSF4P43489 Y_RNA.221-201ENST00000364248 96 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 Y_RNA.346-201ENST00000365385 112 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 Y_RNA.423-201ENST00000384057 113 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 MIR548I2-201ENST00000408348 149 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 AC097635.1-201ENST00000450678 155 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 RNU6-863P-201ENST00000515989 104 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 RNU6-971P-201ENST00000516920 106 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 MTND5P40-201ENST00000559945 246 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 AL512310.12-203ENST00000640543 90 ntBASIC0.21□□□□□ -2.38
TNFRSF4P43489 AL157777.2-201ENST00000258070 137 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 Y_RNA.155-201ENST00000363632 101 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 RNY4P6-201ENST00000363667 96 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 RNU6-571P-201ENST00000384128 107 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 Y_RNA.507-201ENST00000384500 99 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 MT-TR-201ENST00000387439 65 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 SNORD63B-201ENST00000411005 70 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 RNU7-129P-201ENST00000516128 62 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 RNU7-161P-201ENST00000517289 62 ntBASIC0.2□□□□□ -2.38
TNFRSF4P43489 RNU6-170P-201ENST00000362832 104 ntBASIC0.19□□□□□ -2.38
TNFRSF4P43489 RNU6-187P-201ENST00000384139 106 ntBASIC0.19□□□□□ -2.38
TNFRSF4P43489 Y_RNA.809-201ENST00000516058 95 ntBASIC0.19□□□□□ -2.38
TNFRSF4P43489 Y_RNA.703-201ENST00000516846 111 ntBASIC0.19□□□□□ -2.38
TNFRSF4P43489 MIR6718-201ENST00000616153 80 ntBASIC0.19□□□□□ -2.38
TNFRSF4P43489 RNU6-363P-201ENST00000362895 105 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 RNU6-774P-201ENST00000363238 107 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 Y_RNA.344-201ENST00000365381 112 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 RNU6-1126P-201ENST00000384002 107 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 RNU6-815P-201ENST00000384080 113 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 Y_RNA.586-201ENST00000391146 98 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 Y_RNA.630-201ENST00000411370 108 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 RNU7-195P-201ENST00000458793 62 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 RNU7-107P-201ENST00000459121 61 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 RNU6-850P-201ENST00000516934 103 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 MIR3133-201ENST00000583157 78 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 AC067863.3-201ENST00000624172 122 ntBASIC0.18□□□□□ -2.38
TNFRSF4P43489 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.17□□□□□ -2.38
TNFRSF4P43489 Y_RNA.68-201ENST00000362881 102 ntBASIC0.17□□□□□ -2.38
TNFRSF4P43489 RNU6-409P-201ENST00000384114 104 ntBASIC0.17□□□□□ -2.38
TNFRSF4P43489 SPINT5P-201ENST00000448174 155 ntBASIC0.17□□□□□ -2.38
TNFRSF4P43489 MIR4752-201ENST00000579672 72 ntBASIC0.17□□□□□ -2.38
TNFRSF4P43489 MIR5093-201ENST00000583199 100 ntBASIC0.17□□□□□ -2.38
TNFRSF4P43489 MIR6755-201ENST00000619993 66 ntBASIC0.17□□□□□ -2.38
TNFRSF4P43489 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.17□□□□□ -2.38
TNFRSF4P43489 SNORA9.1-201ENST00000362412 131 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 RNA5SP403-201ENST00000363598 108 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 RNU6-726P-201ENST00000364680 107 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 Y_RNA.342-201ENST00000365352 113 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 Y_RNA.362-201ENST00000365518 110 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 Y_RNA.525-201ENST00000384570 113 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 MIR760-201ENST00000390220 80 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 RNU6-816P-201ENST00000390914 107 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 RNU6-1268P-201ENST00000391214 107 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 RNU6-1239P-201ENST00000391310 107 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 AC069113.3-201ENST00000521019 150 ntBASIC0.16□□□□□ -2.38
TNFRSF4P43489 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.15□□□□□ -2.39
TNFRSF4P43489 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.15□□□□□ -2.39
TNFRSF4P43489 RNU6-1313P-201ENST00000362622 102 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 SNORA2A-201ENST00000383885 135 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 RNU6-1062P-201ENST00000383908 107 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 RNU6-524P-201ENST00000384270 107 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 MIR516A2-201ENST00000384888 90 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 MIR516A1-201ENST00000385033 90 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 MIR519A1-201ENST00000385257 85 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 MIR1912-201ENST00000410389 80 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.14□□□□□ -2.39
TNFRSF4P43489 RNU6-90P-201ENST00000606352 106 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 AL162726.3-218ENST00000636401 95 ntBASIC0.14□□□□□ -2.39
TNFRSF4P43489 SNORD38.1-201ENST00000363863 68 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 RNU6-80P-201ENST00000384195 107 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 MIR548G-201ENST00000408442 89 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 Y_RNA.649-201ENST00000459077 103 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 RNU7-106P-201ENST00000459514 67 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 RNU7-13P-201ENST00000516413 62 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 RNU6-1018P-201ENST00000516577 106 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 MIR4315-1-201ENST00000636800 73 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 MIR4315-2-201ENST00000640925 73 ntBASIC0.13□□□□□ -2.39
TNFRSF4P43489 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.13□□□□□ -2.39
TNFRSF4P43489 Y_RNA.35-201ENST00000362601 101 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 Y_RNA.57-201ENST00000362806 113 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 RNU6-1260P-201ENST00000362944 107 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 Y_RNA.218-201ENST00000364218 104 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 Y_RNA.247-201ENST00000364500 92 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 RNU6-746P-201ENST00000384112 109 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 RPL39P34-201ENST00000477141 156 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 AC007012.1-201ENST00000567192 175 ntBASIC0.12□□□□□ -2.39
TNFRSF4P43489 Y_RNA.309-201ENST00000365046 111 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 RNA5SP128-201ENST00000365305 116 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms