Protein–RNA interactions for Protein: P27694

RPA1, Replication protein A 70 kDa DNA-binding subunit, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1P27694 AL161932.1-201ENST00000437408 146 ntBASIC0.16□□□□□ -2.38
RPA1P27694 RNU6-1211P-201ENST00000459179 105 ntBASIC0.16□□□□□ -2.38
RPA1P27694 RNU6-772P-201ENST00000516042 105 ntBASIC0.16□□□□□ -2.38
RPA1P27694 RNU6-850P-201ENST00000516934 103 ntBASIC0.16□□□□□ -2.38
RPA1P27694 MIR3163-201ENST00000581592 73 ntBASIC0.16□□□□□ -2.38
RPA1P27694 AL035470.1-201ENST00000622571 220 ntBASIC0.16□□□□□ -2.38
RPA1P27694 MIR4315-1-201ENST00000636800 73 ntBASIC0.16□□□□□ -2.38
RPA1P27694 MIR4315-2-201ENST00000640925 73 ntBASIC0.16□□□□□ -2.38
RPA1P27694 Y_RNA.540-201ENST00000384638 111 ntBASIC0.15□□□□□ -2.39
RPA1P27694 Y_RNA.549-201ENST00000384657 102 ntBASIC0.15□□□□□ -2.39
RPA1P27694 MIR635-201ENST00000384830 98 ntBASIC0.15□□□□□ -2.39
RPA1P27694 MIR193B-201ENST00000384907 83 ntBASIC0.15□□□□□ -2.39
RPA1P27694 AC138869.1-201ENST00000568623 124 ntBASIC0.15□□□□□ -2.39
RPA1P27694 MIR3133-201ENST00000583157 78 ntBASIC0.15□□□□□ -2.39
RPA1P27694 AC025166.1-201ENST00000612411 163 ntBASIC0.15□□□□□ -2.39
RPA1P27694 Y_RNA.35-201ENST00000362601 101 ntBASIC0.14□□□□□ -2.39
RPA1P27694 RNU4-67P-201ENST00000364569 141 ntBASIC0.14□□□□□ -2.39
RPA1P27694 RNU6-209P-201ENST00000384118 107 ntBASIC0.14□□□□□ -2.39
RPA1P27694 MIR3613-201ENST00000579844 87 ntBASIC0.14□□□□□ -2.39
RPA1P27694 MIR548H5-201ENST00000580314 60 ntBASIC0.14□□□□□ -2.39
RPA1P27694 MIR548AG2-201ENST00000581228 64 ntBASIC0.14□□□□□ -2.39
RPA1P27694 AL162376.1-201ENST00000624117 175 ntBASIC0.14□□□□□ -2.39
RPA1P27694 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.14□□□□□ -2.39
RPA1P27694 RNU6-524P-201ENST00000384270 107 ntBASIC0.13□□□□□ -2.39
RPA1P27694 MIR760-201ENST00000390220 80 ntBASIC0.13□□□□□ -2.39
RPA1P27694 MIR759-201ENST00000390224 91 ntBASIC0.13□□□□□ -2.39
RPA1P27694 RNU6-127P-201ENST00000390897 107 ntBASIC0.13□□□□□ -2.39
RPA1P27694 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
RPA1P27694 RPL39P34-201ENST00000477141 156 ntBASIC0.13□□□□□ -2.39
RPA1P27694 MIR3920-201ENST00000581751 86 ntBASIC0.13□□□□□ -2.39
RPA1P27694 RNU6-363P-201ENST00000362895 105 ntBASIC0.12□□□□□ -2.39
RPA1P27694 RNY1P5-201ENST00000383890 115 ntBASIC0.12□□□□□ -2.39
RPA1P27694 RNU6-1201P-201ENST00000384227 107 ntBASIC0.12□□□□□ -2.39
RPA1P27694 MIR643-201ENST00000385267 97 ntBASIC0.12□□□□□ -2.39
RPA1P27694 SNORA40-201ENST00000388090 126 ntBASIC0.12□□□□□ -2.39
RPA1P27694 MIR501-201ENST00000390204 84 ntBASIC0.12□□□□□ -2.39
RPA1P27694 SNORD41.1-201ENST00000391000 69 ntBASIC0.12□□□□□ -2.39
RPA1P27694 RNA5SP136-201ENST00000410906 107 ntBASIC0.12□□□□□ -2.39
RPA1P27694 RNU7-129P-201ENST00000516128 62 ntBASIC0.12□□□□□ -2.39
RPA1P27694 Y_RNA.213-201ENST00000364178 111 ntBASIC0.11□□□□□ -2.39
RPA1P27694 Y_RNA.362-201ENST00000365518 110 ntBASIC0.11□□□□□ -2.39
RPA1P27694 AC097635.1-201ENST00000450678 155 ntBASIC0.11□□□□□ -2.39
RPA1P27694 Y_RNA.809-201ENST00000516058 95 ntBASIC0.11□□□□□ -2.39
RPA1P27694 RNU6-135P-201ENST00000516769 101 ntBASIC0.11□□□□□ -2.39
RPA1P27694 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.11□□□□□ -2.39
RPA1P27694 AC023932.2-201ENST00000603176 175 ntBASIC0.11□□□□□ -2.39
RPA1P27694 MIR6718-201ENST00000616153 80 ntBASIC0.11□□□□□ -2.39
RPA1P27694 RNU6-1313P-201ENST00000362622 102 ntBASIC0.1□□□□□ -2.39
RPA1P27694 RNU6-170P-201ENST00000362832 104 ntBASIC0.1□□□□□ -2.39
RPA1P27694 Y_RNA.323-201ENST00000365157 109 ntBASIC0.1□□□□□ -2.39
RPA1P27694 MIR548I2-201ENST00000408348 149 ntBASIC0.1□□□□□ -2.39
RPA1P27694 RNA5SP484-201ENST00000458857 111 ntBASIC0.1□□□□□ -2.39
RPA1P27694 SNORD33.1-201ENST00000516213 88 ntBASIC0.1□□□□□ -2.39
RPA1P27694 RNU6-1265P-201ENST00000516342 103 ntBASIC0.1□□□□□ -2.39
RPA1P27694 MIR1273G-201ENST00000577677 100 ntBASIC0.1□□□□□ -2.39
RPA1P27694 AC104408.1-201ENST00000605241 170 ntBASIC0.1□□□□□ -2.39
RPA1P27694 SNORD114-9-201ENST00000364370 72 ntBASIC0.09□□□□□ -2.4
RPA1P27694 Y_RNA.342-201ENST00000365352 113 ntBASIC0.09□□□□□ -2.4
RPA1P27694 RNU6-571P-201ENST00000384128 107 ntBASIC0.09□□□□□ -2.4
RPA1P27694 RNU6-816P-201ENST00000390914 107 ntBASIC0.09□□□□□ -2.4
RPA1P27694 RNU6-1268P-201ENST00000391214 107 ntBASIC0.09□□□□□ -2.4
RPA1P27694 RNU6-1239P-201ENST00000391310 107 ntBASIC0.09□□□□□ -2.4
RPA1P27694 SNORA62.5-201ENST00000516634 120 ntBASIC0.09□□□□□ -2.4
RPA1P27694 RNA5SP480-201ENST00000516840 109 ntBASIC0.09□□□□□ -2.4
RPA1P27694 uc_338.28-201ENST00000612082 187 ntBASIC0.09□□□□□ -2.4
RPA1P27694 AC067863.3-201ENST00000624172 122 ntBASIC0.09□□□□□ -2.4
RPA1P27694 AL512310.12-203ENST00000640543 90 ntBASIC0.09□□□□□ -2.4
RPA1P27694 AL157777.2-201ENST00000258070 137 ntBASIC0.08□□□□□ -2.4
RPA1P27694 SNORD36A-201ENST00000362874 73 ntBASIC0.08□□□□□ -2.4
RPA1P27694 Y_RNA.71-201ENST00000362892 104 ntBASIC0.08□□□□□ -2.4
RPA1P27694 SNORD114-5-201ENST00000362928 70 ntBASIC0.08□□□□□ -2.4
RPA1P27694 RNU6-1260P-201ENST00000362944 107 ntBASIC0.08□□□□□ -2.4
RPA1P27694 RNA5SP214-201ENST00000363378 118 ntBASIC0.08□□□□□ -2.4
RPA1P27694 Y_RNA.205-201ENST00000364128 113 ntBASIC0.08□□□□□ -2.4
RPA1P27694 RNA5SP128-201ENST00000365305 116 ntBASIC0.08□□□□□ -2.4
RPA1P27694 Y_RNA.343-201ENST00000365354 112 ntBASIC0.08□□□□□ -2.4
RPA1P27694 MIR548A1-201ENST00000385041 97 ntBASIC0.08□□□□□ -2.4
RPA1P27694 MIR519A1-201ENST00000385257 85 ntBASIC0.08□□□□□ -2.4
RPA1P27694 MIR548L-201ENST00000408303 86 ntBASIC0.08□□□□□ -2.4
RPA1P27694 HMGN2P22-201ENST00000427588 175 ntBASIC0.08□□□□□ -2.4
RPA1P27694 MIR3668-201ENST00000582138 75 ntBASIC0.08□□□□□ -2.4
RPA1P27694 MIR3925-201ENST00000584674 77 ntBASIC0.08□□□□□ -2.4
RPA1P27694 Y_RNA.155-201ENST00000363632 101 ntBASIC0.07□□□□□ -2.4
RPA1P27694 Y_RNA.173-201ENST00000363776 113 ntBASIC0.07□□□□□ -2.4
RPA1P27694 MIR577-201ENST00000385196 96 ntBASIC0.07□□□□□ -2.4
RPA1P27694 RNU6-659P-201ENST00000516454 104 ntBASIC0.07□□□□□ -2.4
RPA1P27694 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.07□□□□□ -2.4
RPA1P27694 MTND5P40-201ENST00000559945 246 ntBASIC0.07□□□□□ -2.4
RPA1P27694 NAMPTP3-201ENST00000569273 224 ntBASIC0.07□□□□□ -2.4
RPA1P27694 U6.100-201ENST00000636230 99 ntBASIC0.07□□□□□ -2.4
RPA1P27694 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.06□□□□□ -2.4
RPA1P27694 MIR330-201ENST00000362196 94 ntBASIC0.06□□□□□ -2.4
RPA1P27694 SNORA9.1-201ENST00000362412 131 ntBASIC0.06□□□□□ -2.4
RPA1P27694 RNU6-957P-201ENST00000363652 99 ntBASIC0.06□□□□□ -2.4
RPA1P27694 RNU6-1163P-201ENST00000364516 107 ntBASIC0.06□□□□□ -2.4
RPA1P27694 RNU6-409P-201ENST00000384114 104 ntBASIC0.06□□□□□ -2.4
RPA1P27694 MIR548G-201ENST00000408442 89 ntBASIC0.06□□□□□ -2.4
RPA1P27694 SPINT5P-201ENST00000448174 155 ntBASIC0.06□□□□□ -2.4
RPA1P27694 AL162726.3-218ENST00000636401 95 ntBASIC0.06□□□□□ -2.4
RPA1P27694 MIR3914-2-201ENST00000637339 95 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 225 ms