Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.174-201ENST00000363781 105 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNA5SP205-201ENST00000364653 136 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-409P-201ENST00000384114 104 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 MIR1912-201ENST00000410389 80 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 BX276092.1-201ENST00000427368 251 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-406P-201ENST00000516470 107 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-229P-201ENST00000516614 102 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-1006P-201ENST00000516998 103 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 RNU6-789P-201ENST00000517105 102 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 AL109933.3-201ENST00000619095 188 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 AL512310.12-203ENST00000640543 90 ntBASIC0.48□□□□□ -2.33
HOXD4P09016 Y_RNA.56-201ENST00000362798 112 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-1154P-201ENST00000391001 104 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-469P-201ENST00000516253 101 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-313P-201ENST00000516317 112 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU6-479P-201ENST00000516348 105 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNU4-54P-201ENST00000516428 129 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 RNA5SP94-201ENST00000516917 108 ntBASIC0.47□□□□□ -2.33
HOXD4P09016 SNORD18A-201ENST00000363753 72 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 Y_RNA.247-201ENST00000364500 92 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 Y_RNA.309-201ENST00000365046 111 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 SNORA50A-201ENST00000384225 134 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 RNU6-1201P-201ENST00000384227 107 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 SNORD116-21-201ENST00000384507 92 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 RNU6-880P-201ENST00000384526 107 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 AC114737.2-201ENST00000421583 173 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.46□□□□□ -2.34
HOXD4P09016 AL606753.1-201ENST00000427435 87 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 SNRPGP12-201ENST00000449481 213 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 RNU6-1018P-201ENST00000516577 106 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 MIR548H5-201ENST00000580314 60 ntBASIC0.46□□□□□ -2.34
HOXD4P09016 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.46□□□□□ -2.34
HOXD4P09016 Y_RNA.35-201ENST00000362601 101 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 Y_RNA.281-201ENST00000364774 94 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 RNU6-945P-201ENST00000383947 107 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 RNU6-1144P-201ENST00000384247 104 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 SNORA19-201ENST00000384737 128 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 RNU2-51P-201ENST00000410708 197 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 TRAJ51-201ENST00000504127 63 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 AC068339.1-201ENST00000526965 141 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 AC243829.6-201ENST00000612652 106 ntBASIC0.45□□□□□ -2.34
HOXD4P09016 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.45□□□□□ -2.34
HOXD4P09016 U8.6-201ENST00000364939 135 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-716P-201ENST00000365621 103 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-571P-201ENST00000384128 107 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 SNORD38.2-201ENST00000384470 69 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-476P-201ENST00000384726 107 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 Y_RNA.567-201ENST00000384736 106 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-1064P-201ENST00000410626 104 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 RNU6-135P-201ENST00000516769 101 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
HOXD4P09016 SNORA36.1-201ENST00000363424 132 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 SNORD38.1-201ENST00000363863 68 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 RNA5SP517-201ENST00000364724 117 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 VTRNA1-3-201ENST00000365645 89 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR635-201ENST00000384830 98 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR577-201ENST00000385196 96 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR548I2-201ENST00000408348 149 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR1197-201ENST00000408818 88 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AC244505.6-201ENST00000452829 130 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 Y_RNA.681-201ENST00000516445 113 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 RNU6-850P-201ENST00000516934 103 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MTND5P40-201ENST00000559945 246 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AC138869.1-201ENST00000568623 124 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR5009-201ENST00000578736 100 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 RNU7-10P-201ENST00000607194 63 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AL442128.1-201ENST00000615151 90 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 MIR6129-201ENST00000616087 109 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 AC092634.7-201ENST00000621022 103 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.43□□□□□ -2.34
HOXD4P09016 Y_RNA.49-201ENST00000362714 112 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNU6-170P-201ENST00000362832 104 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNA5SP257-201ENST00000363023 116 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 SNORD28-201ENST00000384706 75 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 MIR548G-201ENST00000408442 89 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 SNORD63B-201ENST00000411005 70 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RN7SKP12-201ENST00000516275 143 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNA5SP47-201ENST00000517230 109 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 MIR4694-201ENST00000578534 80 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 MIR4639-201ENST00000584938 69 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.42□□□□□ -2.34
HOXD4P09016 RNU6-1229P-201ENST00000364295 107 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 RNU6-1107P-201ENST00000364817 104 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 Y_RNA.323-201ENST00000365157 109 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 Y_RNA.377-201ENST00000365644 108 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 SNORA8.2-201ENST00000384372 139 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 SPINT5P-201ENST00000448174 155 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 SNORA25.18-201ENST00000607153 114 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 AC244669.1-204ENST00000621564 178 ntBASIC0.41□□□□□ -2.34
HOXD4P09016 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-834P-201ENST00000362367 110 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNY3P2-201ENST00000362918 102 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-832P-201ENST00000363319 107 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 SNORD115-24-201ENST00000363528 82 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 Y_RNA.342-201ENST00000365352 113 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-1056P-201ENST00000383996 107 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 MIR599-201ENST00000385069 95 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.4□□□□□ -2.35
HOXD4P09016 AC097635.1-201ENST00000450678 155 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms