Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 uc_338.6-201ENST00000613544 171 ntBASIC1.35□□□□□ -2.19
TRIM38O00635 MIR6740-201ENST00000618268 113 ntBASIC1.35□□□□□ -2.19
TRIM38O00635 AC027335.2-201ENST00000624030 375 ntBASIC1.35□□□□□ -2.19
TRIM38O00635 MIR26B-201ENST00000362251 77 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 RNU6-315P-201ENST00000362666 107 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 RNA5SP264-201ENST00000363115 107 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 RNU6-624P-201ENST00000363411 107 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 SNORA25.8-201ENST00000364831 128 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 SNORA80D-201ENST00000384488 135 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 MIR588-201ENST00000384900 83 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 MIR150-201ENST00000385048 84 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 RNU6-910P-201ENST00000390844 107 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 RNU6-129P-201ENST00000391022 107 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 BX276092.1-201ENST00000427368 251 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 SNORD79.1-201ENST00000516069 84 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 RNU11-2P-201ENST00000516898 142 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.34□□□□□ -2.19
TRIM38O00635 MIR4500-201ENST00000579472 76 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 MIR6078-201ENST00000611069 100 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 MIR8066-201ENST00000617280 78 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 U6.109-201ENST00000636749 87 ntBASIC1.34□□□□□ -2.19
TRIM38O00635 MIR30D-201ENST00000362283 70 ntBASIC1.33□□□□□ -2.2
TRIM38O00635 MIR758-201ENST00000390227 88 ntBASIC1.33□□□□□ -2.2
TRIM38O00635 MIR1236-201ENST00000408340 102 ntBASIC1.33□□□□□ -2.2
TRIM38O00635 RNU6-523P-201ENST00000516304 54 ntBASIC1.33□□□□□ -2.2
TRIM38O00635 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.33□□□□□ -2.2
TRIM38O00635 AP000753.3-201ENST00000604083 169 ntBASIC1.33□□□□□ -2.2
TRIM38O00635 MIR103A2-201ENST00000362154 78 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 MIR222-201ENST00000384992 110 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 MIR618-201ENST00000385287 98 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 RNU6-788P-201ENST00000390967 104 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 AL591704.2-201ENST00000421658 181 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 snoU13.11-201ENST00000459219 104 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 MIR4452-201ENST00000583004 71 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 SNORA4-201ENST00000584302 138 ntBASIC1.32□□□□□ -2.2
TRIM38O00635 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.32□□□□□ -2.2
TRIM38O00635 Y_RNA.119-201ENST00000363301 96 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 RNU6-205P-201ENST00000390858 107 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 RNA5SP292-201ENST00000390974 118 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 SCARNA18B-201ENST00000458806 135 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 Y_RNA.648-201ENST00000459455 110 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 AC068338.1-201ENST00000565567 176 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 U7.4-201ENST00000614961 63 ntBASIC1.31□□□□□ -2.2
TRIM38O00635 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
TRIM38O00635 SNORD114-22-201ENST00000365423 72 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 Y_RNA.363-201ENST00000365529 113 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 RNU6-571P-201ENST00000384128 107 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 MIR19B1-201ENST00000384829 87 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 RNU6-1165P-201ENST00000410119 107 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 RNU6-75P-201ENST00000515944 104 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 AC008163.1-202ENST00000636004 2889 ntBASIC1.3□□□□□ -2.2
TRIM38O00635 MIR96-201ENST00000362288 78 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 MIRLET7A1-201ENST00000362295 80 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 SNORA63.2-201ENST00000362603 126 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 SNORD36A-201ENST00000362874 73 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 RNU1-124P-201ENST00000363861 145 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 RNU6-132P-201ENST00000383863 107 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 Y_RNA.532-201ENST00000384590 113 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 MIR516A2-201ENST00000384888 90 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 MIR516A1-201ENST00000385033 90 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 RNU7-21P-201ENST00000459430 62 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 snoU13.18-201ENST00000459483 104 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 MIR4796-201ENST00000580742 81 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 MIR3660-201ENST00000584845 100 ntBASIC1.29□□□□□ -2.2
TRIM38O00635 SNORA72.6-201ENST00000384520 129 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 SNORA40.6-201ENST00000391153 128 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 MIR1185-1-201ENST00000408598 86 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 RNU7-90P-201ENST00000459216 62 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 RNU6-557P-201ENST00000516842 110 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 MIR3134-201ENST00000579433 74 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 MIR4264-201ENST00000583520 66 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 MIR6516-201ENST00000630554 81 ntBASIC1.28□□□□□ -2.2
TRIM38O00635 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
TRIM38O00635 RNU6-1094P-201ENST00000362416 104 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU6-161P-201ENST00000363051 106 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU6-654P-201ENST00000364373 107 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU6-396P-201ENST00000365369 105 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU6-811P-201ENST00000384069 107 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 Y_RNA.545-201ENST00000384652 105 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 SNORA75.2-201ENST00000391138 150 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 SNORD90-201ENST00000391145 111 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 SNORA75.3-201ENST00000391231 150 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNA5SP95-201ENST00000410319 137 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU7-62P-201ENST00000458856 62 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU7-106P-201ENST00000459514 67 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU6-1108P-201ENST00000516308 104 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNU7-40P-201ENST00000516397 64 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 RNA5SP404-201ENST00000517118 132 ntBASIC1.27□□□□□ -2.21
TRIM38O00635 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
TRIM38O00635 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
TRIM38O00635 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.26□□□□□ -2.21
TRIM38O00635 Y_RNA.283-201ENST00000364798 112 ntBASIC1.26□□□□□ -2.21
TRIM38O00635 MT-TN-201ENST00000387400 73 ntBASIC1.26□□□□□ -2.21
TRIM38O00635 Y_RNA.588-201ENST00000391254 102 ntBASIC1.26□□□□□ -2.21
TRIM38O00635 SNORA18.5-201ENST00000516616 101 ntBASIC1.26□□□□□ -2.21
TRIM38O00635 MIR2115-201ENST00000516657 100 ntBASIC1.26□□□□□ -2.21
TRIM38O00635 RNU6-531P-201ENST00000516694 104 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 272.1 ms