Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 snoU83B.1-201ENST00000517136 88 ntBASIC-1.16□□□□□ -2.6
TRAV1-1A0A0B4J248 AC021443.1-201ENST00000604478 211 ntBASIC-1.16□□□□□ -2.6
TRAV1-1A0A0B4J248 AC037487.3-201ENST00000606668 112 ntBASIC-1.16□□□□□ -2.6
TRAV1-1A0A0B4J248 MIR1302-2-201ENST00000607096 138 ntBASIC-1.16□□□□□ -2.6
TRAV1-1A0A0B4J248 snoR1.1-201ENST00000628177 80 ntBASIC-1.16□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.17□□□□□ -2.6
TRAV1-1A0A0B4J248 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.17□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.299-201ENST00000364973 94 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-1104P-201ENST00000384723 104 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 MIRLET7B-201ENST00000385140 83 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 SNORD77B-201ENST00000391112 67 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-243P-201ENST00000391140 107 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-1109P-201ENST00000391187 107 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 SNORD2-201ENST00000459163 69 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 MIR4696-201ENST00000581431 70 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 MIR198-201ENST00000637333 62 ntBASIC-1.18□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.28-201ENST00000362554 111 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 SNORD116-6-201ENST00000384711 96 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 AL121914.1-201ENST00000450188 156 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU7-134P-201ENST00000458997 64 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 AP002392.1-201ENST00000537692 208 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 AC138907.4-201ENST00000570107 226 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 AC090574.1-201ENST00000623186 233 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 AC073869.6-201ENST00000640656 341 ntBASIC-1.19□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.26-201ENST00000362539 101 ntBASIC-1.2□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.65-201ENST00000362846 100 ntBASIC-1.2□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.2□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-806P-201ENST00000365147 105 ntBASIC-1.2□□□□□ -2.6
TRAV1-1A0A0B4J248 SNORD101-201ENST00000384027 73 ntBASIC-1.2□□□□□ -2.6
TRAV1-1A0A0B4J248 SNORD116-2-201ENST00000384274 95 ntBASIC-1.2□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-976P-201ENST00000516086 111 ntBASIC-1.2□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-664P-201ENST00000362381 107 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.57-201ENST00000362806 113 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-450P-201ENST00000364654 107 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-588P-201ENST00000410281 105 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 SNORD2.1-201ENST00000458762 69 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-277P-201ENST00000516272 106 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 MIR4306-201ENST00000583390 91 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 AL365265.1-201ENST00000621045 234 ntBASIC-1.21□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-235P-201ENST00000362644 107 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 MTND5P22-201ENST00000458380 195 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 AC068339.1-201ENST00000526965 141 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 MIR4464-201ENST00000580818 92 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 U4.2-201ENST00000618561 85 ntBASIC-1.22□□□□□ -2.6
TRAV1-1A0A0B4J248 RNU6-508P-201ENST00000363231 103 ntBASIC-1.23□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.23□□□□□ -2.61
TRAV1-1A0A0B4J248 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.23□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.23□□□□□ -2.61
TRAV1-1A0A0B4J248 AC080013.6-201ENST00000606185 215 ntBASIC-1.23□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.23□□□□□ -2.61
TRAV1-1A0A0B4J248 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.23□□□□□ -2.61
TRAV1-1A0A0B4J248 MIR451A-201ENST00000385059 72 ntBASIC-1.24□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.24□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.24□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-935P-201ENST00000410371 100 ntBASIC-1.24□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-521P-201ENST00000516663 105 ntBASIC-1.24□□□□□ -2.61
TRAV1-1A0A0B4J248 AC090617.8-201ENST00000623339 167 ntBASIC-1.24□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-103P-201ENST00000363686 107 ntBASIC-1.25□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.25□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU4-17P-201ENST00000365598 141 ntBASIC-1.25□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.25□□□□□ -2.61
TRAV1-1A0A0B4J248 ELOCP20-201ENST00000422460 345 ntBASIC-1.25□□□□□ -2.61
TRAV1-1A0A0B4J248 FGF7P6-202ENST00000451282 293 ntBASIC-1.25□□□□□ -2.61
TRAV1-1A0A0B4J248 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.25□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-208P-201ENST00000362431 107 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-647P-201ENST00000364243 107 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 MT-TL1-201ENST00000386347 75 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 MIR216B-201ENST00000390186 82 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 MIR8485-201ENST00000401372 91 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 RNA5SP180-201ENST00000516181 101 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 MIR4744-201ENST00000581563 82 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 MIR4723-201ENST00000585070 81 ntBASIC-1.26□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-623P-201ENST00000363143 105 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 SNORD114-4-201ENST00000363962 75 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 SNORA63.6-201ENST00000364921 119 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.27□□□□□ -2.61
TRAV1-1A0A0B4J248 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.27□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms